Lipotes vexillifer (Yangtze River dolphin): 103080802
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Entry
103080802 CDS
T03090
Symbol
CASC3
Name
(RefSeq) LOW QUALITY PROTEIN: cancer susceptibility candidate 3
KO
K14323
protein CASC3
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve03013
Nucleocytoplasmic transport
lve03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103080802 (CASC3)
03015 mRNA surveillance pathway
103080802 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lve03019
]
103080802 (CASC3)
Messenger RNA biogenesis [BR:
lve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103080802 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
103080802
NCBI-ProteinID:
XP_007472139
UniProt:
A0A340YJ61
LinkDB
All DBs
Position
Unknown
AA seq
708 aa
AA seq
DB search
MADRRRQRASQDTEDEESGASGSDSGGSPARGGGSCSGSAGGGGSGSLLSQRGGRAGALH
LRRLESGGAKSAEESECESEDGGGRDGIEGDAVLSDYESAEDSEGDEGEYSEEENSKVEL
KSEANDAANSSAKDEKGEEKPDTKGTVTGERQSGDGQESTEPVENKVGKNGPKHLDDDED
RKXXXXIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQE
LIALYGYDIRSAHNPDDIKPRRIRKPRFGSPPQRDPNWIGERPNKSHRHQGPGGTLPPRT
FINRNAVGTGRMSAARNYSRSGGFKEGCAGFRPVEAGGQHAGRSGETVKHETSYRSRRLE
QTPVRDPSPEADAQVLGSPEKEEAAPEIPNPAPDTAPPAPDRPIEKKSYSRARRTRVKAG
DAVKVAEEVPPPPEGLTPAPPVPETTPPPPAKTGNWEAPVDSSTGGLEQDVAQLNITEQN
WSPGQPSFLQSRELRGMPNHIHMGAGPPPQFNRMEEMGVQGGRAKRYSSQRQRPVPEPPA
PPVHISIMEGHYYDPLQFQGPIYTHGDSPAPLPPQGMIVQPEMHLPHPGLHPHQTPAPLP
NPGLYPPPVSMAPGQPPPQQLLAPTYFSAPGVMNFGNPSYPYAPGALPPPPPPHLYPNTQ
APSQVYGGVTYYNPAQQQVQPKPSPPRRTPQPVTIKPPPPEVVSRGSS
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggcagcgcgcttcgcaggacaccgaggacgaagaatctggtgct
tccggctcagacagcggcggttccccggcgcggggcggcgggagctgtagcggtagcgct
ggaggcggcggcagtggctctctgctttcccagcgcggaggtcgagccggggcccttcat
ctgcggcggttggagagcgggggcgccaagagcgctgaggagtcggagtgtgagagtgaa
gatggcggcgggcgggatggcatcgagggcgatgctgttctctcggattatgaaagtgca
gaagactcagaaggtgatgaaggggagtacagtgaagaggaaaactccaaagtggagctg
aaatcagaagccaatgatgctgctaattcttcagcaaaagacgagaagggggaagaaaag
cctgataccaaaggcactgtgactggagagaggcaaagtggggatggacaggagagcaca
gagcctgtggagaacaaagttggtaaaaatggccctaagcatttggatgatgatgaagat
cggaagnnnnnnnnnnnnataccccggaaagggctcttttttgagcatgatcttcgaggg
cagactcaggaggaggaagtcagacctaagggacgtcaacgaaagctgtggaaggatgag
ggtcgctgggagcatgacaagtttcgggaagatgaacaggctccaaagtcccgacaggag
ctcattgctctttatggctatgacatccgctcagctcacaatcctgatgacatcaaaccc
cgaagaatccggaaacccaggtttgggagtcctccacaaagagatccaaactggattggg
gagcggccaaataagtcccatcgccaccagggtcctgggggcaccttaccaccaaggaca
tttatcaacaggaatgctgtaggtactggccgcatgtctgctgccaggaattactctcga
tctggaggcttcaaggaaggttgtgctggttttaggcctgtggaagctggcgggcagcat
gctggccggtctggtgagactgttaaacatgagactagttaccggtcacggcgcctggag
cagactccagtaagggatccatctccggaagcagatgctcaagtgcttggcagtcctgag
aaggaagaggcagccccagagataccaaatcctgctcctgacactgcaccaccagctcct
gacaggcctattgagaagaaatcctattcccgggcaagaagaaccagggtcaaagctgga
gatgcagtcaaggttgcagaggaggtgccccctccacctgaagggctgaccccagcacct
ccagtcccagaaactacgcctcctccgcctgctaagactgggaactgggaggctccagtg
gattcttctacaggtggacttgaacaagatgtggcacaactaaatataacagaacagaat
tggagcccagggcagccttcattcctgcagtcacgtgagcttcggggtatgcccaaccac
atacacatgggagcaggacctccacctcagtttaaccggatggaagaaatgggtgtccag
ggtgggcgagccaaacgctattcatctcaacggcaaagacctgtgccggagccccctgcc
cctcctgtgcacatcagtatcatggagggacattactatgatccattgcagttccaggga
ccaatctatacccatggtgacagccctgccccactgcctcctcagggcatgattgtgcag
ccagaaatgcaccttccccacccaggtttacatccccaccagacaccggcacctctgccc
aatccaggcctctatcccccaccagtgtccatggctccaggacagccaccacctcagcag
ttgcttgctcctacctacttttctgctccaggcgtcatgaactttggtaaccccagttac
ccttatgctccaggggcactgcctccccccccaccgcctcatctatatcctaacacacag
gccccatcgcaggtatatggaggagtgacctactataaccccgcccagcagcaggtgcag
ccaaagccctccccaccccggaggactccccagccagtcaccatcaagcccccaccacct
gaggttgtaagcaggggttccagttaa
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