Lipotes vexillifer (Yangtze River dolphin): 103080964
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Entry
103080964 CDS
T03090
Symbol
VIM
Name
(RefSeq) vimentin
KO
K07606
vimentin
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve04820
Cytoskeleton in muscle cells
lve05169
Epstein-Barr virus infection
lve05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
103080964 (VIM)
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
103080964 (VIM)
09172 Infectious disease: viral
05169 Epstein-Barr virus infection
103080964 (VIM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lve03019
]
103080964 (VIM)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lve04812
]
103080964 (VIM)
04147 Exosome [BR:
lve04147
]
103080964 (VIM)
Messenger RNA biogenesis [BR:
lve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
103080964 (VIM)
Cytoskeleton proteins [BR:
lve04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
103080964 (VIM)
Exosome [BR:
lve04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
103080964 (VIM)
Exosomal proteins of other cancer cells
103080964 (VIM)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Filament
Filament_head
DUF1664
TolA_bind_tri
DUF7491
TPR_MLP1_2
RBD-FIP
Sec10_N
GeBP-like_DBD
DUF4515
Laminin_II
CENP-F_leu_zip
Motif
Other DBs
NCBI-GeneID:
103080964
NCBI-ProteinID:
XP_007460935
UniProt:
A0A340XPH9
LinkDB
All DBs
Position
Unknown
AA seq
466 aa
AA seq
DB search
MSSRSVSSSSYRRMFGGPGTASRPSSSRSYVTTATRTYSLGSALRPGTSRSLYASSPGGV
YATRSAAVRLRSSMPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDK
VRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLSE
DIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDE
EIQELQAQIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSE
AANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQD
TIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRRLLEGEESRIALPLPNFSS
LNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaggtccgtgtcctcgtcctcctaccgcaggatgttcggcggccccggcacc
gcgagccggccgagctccagccggagctacgtgaccacggccacccgcacctacagcctg
ggcagcgcgctgcgccccggcaccagccgcagcctctacgcctcgtccccgggcggcgtg
tacgccacgcgatccgcggccgtgcgcctgcggagcagcatgcccggcgtgcgcctgctg
caagactcggtggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgc
accaacgagaaggtggagctgcaggagctgaacgaccgcttcgccaactacatcgacaag
gtgcgcttcctggagcagcagaacaagatcctgctggccgagctcgagcagctcaagggc
cagggcaagtcgcgcctgggggacctctacgaggaggagatgcgagagctgcgccggcag
gtggaccagctcaccaacgacaaagcccgcgtcgaggtggagcgcgacaacctgtccgag
gacatcatgcgtctccgggagaagttgcaggaggagatgcttcagagggaggaagccgag
agcaccctgcagtctttcagacaggatgttgacaatgcttcattggcacgtctggacctg
gagcgtaaagtggaatccttgcaagaagagattgcctttttgaagaaactacatgatgag
gaaatccaggagctgcaggcccagattcaagaacagcacgtccagatcgatatggatgtt
tccaagcccgacctcacggctgccctgcgtgacgtccgccagcagtacgagagcgtggcc
gccaagaacctccaggaggctgaggaatggtacaagtccaagttcgctgacctctccgag
gctgctaaccgcaacaacgatgccctgcgccaggccaagcaggagtcgaacgagtaccgt
cggcaggtgcagtccctcacctgcgaggtggatgccctcaaaggcactaacgagtctctg
gaacgccagatgcgtgaaatggaagagaactttgccgtggaagctgctaactaccaagac
actattggccgcctgcaggacgagattcagaacatgaaggaagagatggctcgccacctg
cgtgaataccaagatctgctgaatgttaagatggctctcgacatcgagatcgccacctac
aggaggctgctggaaggagaggaaagcaggattgctctgcctcttccaaacttttcttcc
ctgaacctgagggaaaccaatctggattcactccctctggttgacacccattcaaaaagg
acacttctgattaagacggttgaaaccagagatggacaggttatcaacgaaacttcccag
catcacgatgatctggaataa
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