Lipotes vexillifer (Yangtze River dolphin): 103082870
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Entry
103082870 CDS
T03090
Symbol
SHANK1
Name
(RefSeq) LOW QUALITY PROTEIN: SH3 and multiple ankyrin repeat domains protein 1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve04724
Glutamatergic synapse
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09150 Organismal Systems
09156 Nervous system
04724 Glutamatergic synapse
103082870 (SHANK1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
SAM_1
Ank_5
SH3_2
SAM_2
PDZ_6
PDZ
SH3_1
SH3_9
FERM_f0
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
103082870
NCBI-ProteinID:
XP_007463477
UniProt:
A0A340XTI3
LinkDB
All DBs
Position
Unknown
AA seq
2143 aa
AA seq
DB search
MTHSPASSEDEERHSASECPEGGSESDSSPDGPGRGPRGTRGRGSGGPGSLASIRGLQGR
SMSVPDDAHFSMMVFRIGIPDLHQTKCLRFNPDATIWTAKQQVLCALSESLQDVLNYGLF
QPATSGRDANFLEEERLLREYPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLHTKTGL
KKFLEYVQLGTSDKVARLLDKGLDPNYHDSDSGETPLTLAAQTEGSVEVIRTLCLGGAHI
DFRARDGMTALHKAACARHCLALTALLDLGGSPNYKDRRGLTPLFHTAMVGGDPRCCELL
LYNRAQLGIADENGWQEIHQACQRGHSQHLEHLLFYGAEPGAQNASGNTALHICALYNKE
TCARILLYRGADKDVKNNSGQTPFQVAVIAGNFELGELIRNHREQDVVPFQESPKYAARR
RGPPGVGLTVPPALLRANSDTSMALPDWMVFAAPGTSSAGAPGPTSGPQGQSQPSAPSTK
LSSGTLRSASSPRGARARSPSRGRHPEEAKRQPRGRPSSSGTPREGPAGGTGGSGGPGGS
LGSRGRRRKLYSAVPGRSFMAVKSYQAQAEGEISLSKGEKIKVLSIGEGGFWEGQVKGRI
GWFPSDCLEEVANRSQEAKQESRSDKAKRLFRHYTVGSYDSFDAPSLMDGIGPGSDYVIK
EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGD
FLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDEAVHKKAPPQTKRLPPP
TISLRSKSMTSELEEMEYEQQAAPVPSMEKKRTVYQMALNKLDEILAAAQQTISASESPG
PGGLASLGKHRPKGFFATESSFDPHHRSQPSYERPSYLPPGPGLMLRQKSIGAAEDERPY
LAPPAMKFSRSLSVPGSEDIPPPPTTSPPEPPYSTPPAPSSSGRLTPSPRGAPFNPGSGV
PHPASSPSSFDGPCPPDSRAGSREKSLYHGGALPPAHHPPPPHQPHAPLPQPHHHHAHPP
HPPEMETGGSPDDPPPRLALGPQPSLRGWRGGGPSATPGALSPSHHGSGGGGGGSSQAPA
LRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGGGLPPTPSPTSPASPQPP
PAAAAPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPETAGGGGGGSSAPSPA
PAMSPVPPPPSPVPAPASPSGPATLDFTSQFGAALVGAARXXXSTDTGDEDGGESALGPG
APPGPRLRHSKSIDEGMFSAEPYLRLESAGAGSGGGYGGYGAGSRAYGSSGGSSAFTSFL
PPRPLVHPLTGKALDPASPLGLALAARERALKESAEGGGVPQPPPRPPSPRYEAPPPTPH
HHSPHAHHEPVLRLWGAPPPDPARRELGYRAGLGSQEKSLPASPPAARRSLLHRLPPTAP
GVGPLLLQLGSEPPAPHPGVSKAWRSAAPEEPERLPLHVRFLENCQPRAGGAGGRGPPSE
DGPGIPPPSPRRSVPPSPTSPRGSDENGLPLLVLPPPAPSVDVEDGEFLFVEPLPPPLEF
SNSFEKPESPLTPGPPHPLPDPPTAASPAPPAPPPAVAAAPPTLDSTASSLTSYDSEVAT
LTQAGPAAAGDAPPPGPAAPAAPPPPAPQPGPDPPAGTDSGIEEVDSRSSSDHPLETISS
ASTLSSLSAEGGAGGGVASVASGPELLDTYVAYLDGQAFGGSGPPGPPYPPQLMTPSKLR
GRALGASGGLRPGPGGGLRDPVTPTSPTVSVTGAGTDGLLALSGCSGPSTAGVAGGPGAV
EPEGPPVPLPSASSLPRKLLPWEEGPGPPPPPLPGPLAQPQASALATVKASIISELSSKL
QQFGGSSAAGGALPWARGGGGGSGDGHHGGASYVPERTSSLQRQRLSEDSQPSLLSKPVS
SLFQNWSKAPLPPLPTGGGGSASAAAAAGATSPSATSSSTSARHLQGVEFEMRPPLLRRA
PSPSLLPASEHKVSPAPRPSSLPILPAGPLYPGLFDIRGSPTGGAGGSADPFAPVFVPPH
PGMSGGLGGALSGASRSLSPTRLLSLPPDKPFSAKPLGFWTKFDVADWLEWLGLAEHRAR
FLDHEIDGSHLPALTKEDYVDLGVTRVGHRMNIDRALKFFLER
NT seq
6432 nt
NT seq
+upstream
nt +downstream
nt
atgacccacagccccgcgtcaagcgaggacgaggaacgccacagtgccagcgagtgtccc
gaggggggctcagagtccgacagctccccagacgggcctgggagaggcccccgggggacc
cggggccggggcagcgggggacctggtagcctggcctcgattcgaggcctccagggccgc
tccatgtctgtcccagacgacgcccacttcagcatgatggtctttaggattggcatccct
gacctgcaccagacaaaatgcctgcgcttcaacccagatgccaccatctggacagccaag
cagcaggtgctctgtgccctgagcgagagcctgcaggatgtcctcaactacggcctgttc
cagccggccacgtcgggtcgcgacgccaacttcctggaggaggaacggctgctgcgggag
tacccccagtcctttgagaagggggtgccctacctggagttccgatacaagacccgagtt
tacaaacagaccaacctggatgagaagcagctggccaagttgcacacgaagacgggcttg
aaaaagttcctggagtacgtgcagctcgggacgtccgataaggtggcacggctgctggac
aaggggctggaccccaattatcatgactcggattcaggagagacccccctgacgctggct
gcccagacagaaggctctgtagaggtgattcgaaccctgtgcctgggcggggcccacatc
gacttccgggcccgggatggcatgacagcgctacacaaggccgcgtgtgcccgtcactgc
ctcgctctcacggcgctcctggatcttggggggtcccccaactacaaggaccgccggggg
ctgactcctctgttccatacggctatggtggggggcgacccccgctgctgtgagctgctc
ctgtacaacagggcccagctgggcatagctgatgagaacggctggcaggagatccaccag
gcctgccagaggggccattctcagcacctggaacacctgctcttctatggggctgagcct
ggagcccagaacgcctcggggaacacggccctgcacatctgcgccctctacaataaggag
acgtgtgctaggatactcctgtaccgaggagctgacaaggatgtgaagaataacagcggc
cagacccccttccaggtggcagtgattgctgggaactttgaacttggggagctgatccga
aaccatcgagaacaggacgtggtgcccttccaggagtcccccaagtacgcagcccggcga
cggggaccgcccggcgtgggactgacggtgccccccgcgctgctgcgggccaacagcgac
accagcatggccctgcccgactggatggtgttcgccgccccggggacctcgtccgctggg
gcccccggccctacctcagggccccagggccagtcgcagccctcggcccccagcaccaag
ctcagcagtgggaccctccgaagtgccagcagcccccggggcgcccgggcccgctcccca
tcccgagggaggcaccccgaggaggccaagaggcagccccgtggacggcccagctccagc
gggacaccccgggaagggccagctgggggcaccgggggctccgggggccccgggggctcc
ctgggcagccgcgggagacgccggaagctctactcagcggtccccggacgttccttcatg
gctgtgaagtcctaccaggcccaagccgagggggagatctccctgagcaagggcgagaag
atcaaagtgcttagcatcggggaaggaggcttctgggaaggccaggtcaaaggtcgcatc
ggctggttcccctctgactgcttggaagaggtggccaaccgctcccaggaggcaaagcaa
gaaagccgaagtgacaaggcaaagagactattccggcattataccgtgggctcctacgac
agctttgatgccccaagcttgatggatgggattggcccagggagtgattacgtcatcaag
gagaagacagtcctgctgcagaagaaagacagtgagggctttgggttcgtgctccgaggg
gccaaggcgcagacccccatcgaggagttcacccccaccccggccttcccggcgctgcag
tatctggagtcggtggacgagggtggcgtggcatggcgagctggactgcgaatgggagac
ttcctcattgaggtgaacgggcagaatgtggtgaaggtcggccaccggcaggtggtgaac
atgatccgccaagggggcaacacgctgatggtcaaggtggtgatggtcaccaggcacccg
gacatggacgaggctgttcataagaaagcaccgccgcagactaagcggctcccgcctcca
accatctccctgcgttccaagtctatgacctcagagctggaggagatggagtacgagcag
caggctgcgccggtgcccagcatggagaagaagcggaccgtgtatcagatggctctcaac
aaactggatgaaattttggcggcagctcagcagaccatcagtgcaagtgagagtcctggg
cctggtggcctcgcgtccctgggcaaacaccgacccaaaggcttctttgccactgagtcg
agctttgatccccaccaccgctcccagccaagttatgaacgtccttcctacctgcctcca
ggacctgggcttatgctccggcaaaagtctattggggctgcagaagatgagagaccctac
ctagcacccccagccatgaagttcagccgcagcctatctgtgcctggttcggaggacatc
ccgccgccgcccaccacgtccccaccagagcccccctacagcacacctccagccccctct
tcctccggccgcctcactccctctccccggggagcgcccttcaaccctggctcaggtgtc
ccccaccccgcctcgtcaccgtcgtccttcgatgggccctgccctcctgacagccgtgca
gggagccgtgagaagagcttgtaccacggcggggccctgccccctgcgcaccacccgccc
cccccacaccagccgcacgctccgctgccccagccacaccaccaccacgcccacccaccg
catcccccggagatggagacgggcggctcccccgatgaccccccaccgcgactggctctg
gggccccagcccagcctgcgcggctggcgcggcggcgggcccagcgcgaccccgggggcc
ctgtccccgtcgcaccacggcagcgggggcgggggtggcggctcctcccaggccccggcc
ctgcgttacttccagctgcctccccgggcggccagcgcggccatgtacgtgccggcccgt
tcgggccgcgggcgcaagggcccgctcgtcaagcagaccaaagtcgaaggcgagccccag
aagggcggcggcctcccgcccacgccctcgcccacgtctccggcgtccccgcagccgccg
ccggccgcggccgccccgtcggaaaagaactccatccccatccccaccatcatcatcaag
gctccatccaccagtagcagcggccgcagcagccagggcagcagcaccgaggcggaaccc
ccgacccagcccgagaccgcgggcggcggcggcggcggctcctccgcgccgagccccgcc
ccggccatgtcgccggtgccgccgccgccctcgcccgtgcccgcccccgcctcgcccagc
ggcccggccaccctcgatttcaccagccagttcggagccgccctggtcggggcggctcgg
nnnnnnnnntccaccgacacgggggacgaggatggcggcgagagcgcgctgggcccgggg
gcgcccccggggccccggctgcgccactccaaatccatcgatgaaggcatgttttcggcc
gagccctacctccggctggagtccgcaggcgccgggagcggcggcggctacgggggctac
ggagccggcagccgagcttacgggagcagcggaggcagcagcgccttcaccagcttcctg
ccgccgcgccccctggtccacccgctgaccggcaaggccctggacccagcctccccgctc
gggctggccctggccgcccgagagcgggcgctgaaggagtccgcggagggcggtggggtc
ccccagccccctccgaggcccccgtcgccccgctacgaggctccgccgcccacgccgcac
caccactcgccccacgcccaccacgagccggtgctgcgtctctggggagcccccccgccg
gacccggcgcgccgggagctgggctaccgggctgggctgggcagccaggagaagtccctt
ccggccagcccgccagctgcccgacgctccctgctgcaccgcctgccgcccaccgccccc
ggggtcgggcccctcctgctgcagctggggtccgagccccccgccccgcaccccggggtg
agcaaagcctggaggtccgcagccccggaggagcccgagcggctgcccctccacgtgcgg
ttcctcgagaactgccagccccgggccggtggggcggggggcagggggcccccctcggag
gacgggccggggatcccaccgcccagccctcgccggtccgtgcccccctcgccgacctcc
ccgcggggcagtgacgagaacgggctccccctgctggtcctgccgccccccgccccctcg
gtggacgtggaagacggcgaatttctctttgtggaaccgctgcccccgcccctggagttc
tccaacagctttgagaagcccgagtcgcccctcacgccggggccgccccacccgctgccg
gacccacccaccgcggccagcccagcgccccctgcgccgccccctgccgtggccgccgcc
cctcccacgctggactccaccgcatccagcctgacttcctatgacagcgaggtggccacg
ctgacccaggcaggccccgcagctgctggggacgcgcctccgccgggcccagcagcccca
gccgccccgcctccccctgccccacagcctggcccagaccctccagctggcacagattct
ggtatcgaggaggtggacagtcggagcagcagtgaccacccgctggagaccatcagcagc
gcgtccacgctgagcagcctgtctgccgaaggcggggctggcggcggggtggccagtgtg
gccagtgggccggagcttctggacacgtatgtggcctacctggacggccaggccttcggg
ggcagcggtcctcctggcccaccatacccgccgcagctcatgactccctctaagctccgg
ggccgggcgcttggggccagtggaggcctgcggcctgggcccggtgggggactccgagac
cctgtcactcccaccagccccaccgtctcggtgacgggggctggaaccgatgggctgctg
gccctgagtggttgctcaggaccttcgacggcaggtgtggccggcggtccaggggctgta
gagccagaaggcccaccggtgcccttgccatccgcctcctccctgccccggaagctgctg
ccctgggaggagggcccgggtccaccgccaccacccctgcctgggcccttagcccagcct
caggcctcagccttggccacagtaaaagccagcatcatcagtgaactcagctccaagctt
cagcagtttgggggctcctcggcagctggtggcgctctgccctgggcccggggaggcggc
gggggaagcggggacggccaccacgggggagccagctacgtcccagagaggacttcctcc
ctgcagcggcagagactctcggaagactcccagccctcgcttctctccaaacctgtcagc
agcctgtttcagaactggtccaaagcgcctctgccgcccctccccacgggaggcgggggc
tccgcttcggccgctgcagccgcgggggccacctcgccgtcggccacctcctcctccacg
tccgcccgccacctccagggagtggagttcgagatgcggccacctttgctccgccgggcc
cctagcccgtcactgctgcccgcctcggagcacaaggtcagccctgcaccccggccctcc
tccctacccatcctgcctgcaggaccgctctacccgggcctctttgacatccgcggctcc
cccaccggaggggcaggaggctcggctgaccccttcgcccctgtctttgtgccaccgcac
cccgggatgtccgggggtctcggtggggccttgtcaggggcctcgcgctccctctcaccg
acccgcctgctctccctgcccccggacaagccgttcagcgctaaacctctggggttctgg
accaagttcgacgtggctgattggcttgagtggctgggcttggccgagcaccgagcccgg
ttcctggaccacgagatcgatggctcccacctgcccgccttgaccaaggaggactacgtc
gatctgggggtgaccagggtgggccaccgcatgaacatcgaccgggctctcaaatttttc
ctggagaggtga
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