Lipotes vexillifer (Yangtze River dolphin): 103083003
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Entry
103083003 CDS
T03090
Symbol
DHX16
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103083003 (DHX16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lve03041
]
103083003 (DHX16)
Enzymes [BR:
lve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103083003 (DHX16)
Spliceosome [BR:
lve03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103083003 (DHX16)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
AAA_30
SecA_DEAD
SRP54
nSTAND3
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
103083003
NCBI-ProteinID:
XP_007449263
UniProt:
A0A340WI22
LinkDB
All DBs
Position
Unknown
AA seq
1045 aa
AA seq
DB search
MATPAGLERWVQDELHSVLGLSERHVAQFLIGTAQRCASAEEFVQRLRDTDTLDVSGPAR
DFALRLWNKVPRKAVVEKPARAAEREARALLEKNRSYRLLEDSEESSEETVGRAGSSLRK
KLKKRKHLRKKRQEEEEEEEEEEFSEKGKRKTHGSKQQTEKPESEDEWERTERERLQDLE
ERDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKSRREYLA
KREREKLEDLEAELVDEEFLFGDVELSQHERRELRYKQRVRDLAREYRAAGEQEKLEATN
RYHMPEETRGQPARAVDLVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLV
LEEEETIEFVRATQLQGDEEPSAPPVPTQAQQKESIQIVRRSLPVFPFREELLAAIASHQ
VLIIEGETGSGKTTQIPQYLFEEGYTKKGVKIACTQPRRVAAMSVAARVAREMGVKLGNE
VGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLI
KDVARFRPELKVLVASATLDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACV
VSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQ
ARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSK
ASASQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLM
HFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSC
SEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQ
WCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTR
SGYRTVKQQQTVFIHPNSSLFEEQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY
KAKELEDPHAKKMPRKVGKTREELG
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccggcggggctagagcgctgggtgcaagacgagctgcactcggtgctggga
ctgagcgagcggcatgtggcccagttcctcatcggtaccgcgcagcgctgcgcctcggca
gaggagttcgtgcagcgcttgcgagacaccgataccctggacgttagtgggccggcccgg
gacttcgccttgagactctggaacaaggtcccaaggaaggctgtggtggaaaagccagct
cgggcagcagagcgagaggccagagccctgctggaaaagaaccgatcctacaggttgctg
gaggacagtgaggagagcagtgaggagactgtaggcagggccgggagcagtctccggaag
aagctgaaaaaacggaaacacctcaggaagaaacgtcaggaggaagaggaagaagaagag
gaggaagagttttctgagaaaggaaagaggaagacacatgggtctaaacagcagacggag
aagccagagtcagaggatgagtgggagcggacagagcgagagcgccttcaggacctggag
gagcgcgatgcgttcgccgagcgggttcggcagcgggacaaggaccggactcgcaacgtc
ctggagcggtcagacaagaaggcttatgaagaggctcagaagcgcctcaagatggctgag
gaagaccggaaagccatggtccctgagctgcggaagaaatcccgccgagaatacctggcc
aagcgggagcgcgagaagcttgaggacctggaggccgagctggtggacgaggagttcctc
tttggggatgtggagctgagccaacacgagcggcgtgagctcagatacaagcagcgagtg
cgggatctggcccgggagtaccgggcggctggggagcaggagaagctggaggccaccaat
cgctaccacatgcccgaggagacgcgaggacagccagcacgagcggtggatctagtggag
gaggagtccggtgcccctggtgaggagcagcggcgctgggaggaggcccggctcggggca
gcatccctgaagtttggggcccgagatgctgcctcccaggagcccaagtatcagctggtg
ctggaggaagaggagaccatcgagtttgtccgggccactcagctccagggtgacgaggag
ccgtcagccccacccgttccaacccaggcccagcagaaggagtccatccagattgtccgc
cgcagcctcccggtgttcccgttccgcgaggagctcctggccgccattgctagtcatcag
gtcctcatcatcgaaggcgagacaggctcgggcaagaccacccaaatcccacagtacctc
tttgaggagggctacacaaagaaaggtgtgaagattgcctgcacccagccccggagagtg
gcagccatgagtgtggctgcccgagtggcccgggagatgggtgtgaagcttgggaatgag
gttggctacagcatccgctttgaggactgcacatcagagcgaactgtcctgcgctacatg
acggatgggatgcttctccgggagttcctctctgagcctgaccttgcgagttacagcgtg
gtgatggtggatgaggcccacgaacggaccctgcacacagacattctctttgggttgatc
aaggatgttgctcgattccgacctgagctcaaggtcctggtggcttcagccacactggac
actgcccgcttttccaccttctttgatgacgcccccgtcttccggatccctggacgcagg
tttccagttgacatcttctataccaaggctccagaggcagactacctggaggcctgtgtg
gtgtctgtgctgcagattcatgtgacccagccccctggggatatcctggtgttcctgaca
ggacaggaggagattgaggctgcctgtgagatgctccaggatcgctgccgccgcctgggc
tccaaaatccgggagctcctggtgctgcccatttatgccaacctgccttccgatatgcag
gcgcggatcttccagcccacaccccctggggcacggaaggtagttgtggcaacgaacatc
gccgagacctcgctcaccatcgagggcatcatttacgtgctggacccgggcttctgtaag
cagaagagctacaacccgcgcacgggcatggaatcgctcaccgtcacaccctgcagcaag
gcctcagccagtcagcgagctggtcgggcgggtcgggtggctgcagggaagtgcttccgc
ctgtataccgcctgggcctatcagcacgagctcgaagaaaccacagtgcccgagattcag
aggaccagcctgggcaacgtcgtgttgctgctcaagagtttagggatccacgacctaatg
cactttgatttcctggaccctccaccatatgagaccctgctgctggctttggaacagctg
tacgcgctgggggccctcaaccaccttggggagctcaccacgtctggtcgaaagatggca
gagctgccggtggaccccatgctgtctaaaatgatcctggcctctgagaagtacagctgt
tcggaggagatcctgacagtggctgccatgctctctgtcaacaactccatcttctaccga
cccaaggacaaggttgtccatgccgacaatgctcgtgtcaacttcttcctccctggtggg
gaccacctggttctgctgaacgtttatacacagtgggctgagagtggttactcttcccag
tggtgctatgagaactttgtacagttcagatcgatgcgccgagcccgggatgtgcgggaa
cagctggaggggctcctggaacgcgtggaagtcggtctcagttcctgccagggggactat
atccgtgtccgaaaggccatcactgctggttacttttaccacacggcacggttgactcgc
agcggctaccgcacagtgaaacagcagcagacggtgttcattcatcccaactcttccctc
tttgaggaacagccacgctggttgctctaccacgaacttgtcttgaccaccaaagagttc
atgagacaggtattggagattgagagcagttggcttctggaggtggctccccactattac
aaggccaaggagctagaagatccccatgctaagaaaatgcccagaaaagtaggcaagaca
cgagaagagctagggtaa
DBGET
integrated database retrieval system
