Lipotes vexillifer (Yangtze River dolphin): 103084495
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Entry
103084495 CDS
T03090
Symbol
PDCD11
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lve03009
]
103084495 (PDCD11)
Ribosome biogenesis [BR:
lve03009
]
Eukaryotic type
90S particles
Other 90S particles
103084495 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_C
OB_RRP5
OB_RRP5_4th
TPR_14
TPR_19
ARM_TT21
TPR_CcmH_CycH
TPR_15
ARM_TT21_5th
DUF7017
DUF2110
UTP6_C
Motif
Other DBs
NCBI-GeneID:
103084495
NCBI-ProteinID:
XP_007470493
UniProt:
A0A340YBQ1
LinkDB
All DBs
Position
Unknown
AA seq
1869 aa
AA seq
DB search
MEESFPRGGTRKTHKSEKEKAFQQSFEQDNLFDISTEEESTKRKKIQKEQAKTKKLKVEK
RESSKSVREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGCVQVTEICDAYTE
KLNEQVAQEEALQDLVSLPELFSPGMLVRCVVSSLGITKRGKKNVKLSLNPRNVNKVLSA
EALKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIQQKNKGAKLKVGQYLNC
LIEEVKGNGGVVSLSVGYSEVSAAIATEEQNWTLNSLLPGLVVKAQVQKVTPFGLTLKFL
SFFTGLVDFMHLDPKKARTYFSNQPVRACVLCVHPRTRAVRLSLRAVFLQPGRPLTRLSC
QQLGAVLDDVPVQGFFGNAGATFRLTDGALAYARLSHLSNSKKVFKPETFKPGNTHKCRI
IDYSQMDELALLSLRTSVIEAQFLSYRDIKPGALVKGKVMTVKPYGMLVKVGRQIRALVP
PMHLADILMKNPEKKYHAGDEVKCRVLLCDPEARKLMMTLKKTLVESKLPAITCYADAKP
GLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAAYIPDPESVFYTGQVVKVAVLNCEP
SKERMLLSFKLSSDPKEECVGHSQKKKKAINAGQLVDVKVLEKTKDGLQVAVLPHNVPGF
LPTSHLSDHVTNGPLLHCWLQAGDTLHRVLCLSEGEGRVLLCRKPALVSAVEGGQDPKSF
SEIHPGMLLVGFVKNIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKV
TNVDEEKQRMLLSLRLSDCTLEDLATTSLRLLSQCLEERQGVRSLMSNRDSVLMQTLAEM
TPGMVLDLEVQEVLGDGSVLFSEGPVPGLVLRASKYHRAGQEVESGQKQKVAVLNVDMLK
LEVHVSLCRDLVKRKAKQLKKGSEHQAIVQHLEEPFALASLVETGQLAAFSLTSHLNDTF
RFDSEKLQVGQGVSLTLQTTEPGVTGLLLAVEGPAAKRTMRQTRKDSETVDEDEEVDPAL
VLGTVRKHTLSIGDVVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPVGTSPTAKLQ
VGKKVTARVIGGRDMKTFKFLPISHPRFIRTIPELSVRPSELEKDGHTALNTHSVSPLEK
IKQYQAGQTVTCFLKKYNVVKKWLEVDIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQA
LKATVVGPDSSKAFLCLSLIGPHKLEKGEVAMGRVVKVLPKEGLTVSFPFGKIGXXXXXS
YSETPLENFTPQKIVRCYVLSATGPVLTLSLRSSRTNPETKSKITDPEINSIQDIEEGQL
LRGYVKSIQPSGVLLGLGPSVTGLAQYPHVSQYSLSQNAPDDRSLPEGKLLTAKVLSLNR
RENLVELSIPAEDTGKPDVFSASLGLPLAKREGRETEAEERDHEGEEKAERKNQKQNEKR
TGRGREGAQLPGKKKEPREPRADKLGKRPRPESGSEQEGGNKRQRRAAPPEEDDSGVEVY
YREGQEEVEETGVRPQEKQTRPAEAPRLQLSSGFAWDVELDTLTPALPPREESSDSEEDE
KLEQATQQKKSRKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILW
LQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVAQLNLENMYGSQGSLTKVFE
RAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQAG
ASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYI
DMIIKHGSQKEVRGIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYV
EAKSSMWED
NT seq
5610 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaagcttcccccgagggggtacaagaaagacccacaaatcagagaaagagaaa
gctttccagcagtcatttgaacaagacaacttatttgatatttctactgaagaggaatcc
accaaaaggaaaaagatccagaaagagcaggcaaaaaccaaaaagttgaaagttgaaaag
agagaaagcagcaagtctgtaagagagaagtttgaaatccttagtgtggagtccctgtgt
gaggggatgcggattttgggttgcgtgaaagaggtgaatgagctggaactggtgattagt
ctccccaacggcctccaggggtgtgtgcaagtgactgaaatctgtgatgcctacactgaa
aagctgaatgagcaggtggcacaagaagaagccctgcaggacctggtcagcttgcctgag
ctcttctcacctgggatgctggtgagatgtgtggtgagcagtctgggcatcacaaagagg
ggcaaaaagaatgtcaagctgtctctgaaccccagaaatgtcaacaaagtgctgagtgcg
gaggccctgaaacccggcatgctgctcacgggcactgtgtccagcctggaagaccatggc
tatctagtggacattggtgttagtggggccagagcttttctgccactgcagaaagcccag
gagtacatccaacagaagaacaaaggtgctaaattgaaggtaggtcagtacctgaactgc
cttattgaagaggtgaaaggtaatggaggagttgttagtctgtctgttggttactcagaa
gtttctgctgccattgctactgaggagcaaaactggaccctcaacagcttgctaccagga
ctggtagtcaaagcccaggtacagaaggtgactccatttggccttacgctaaaattcctc
tcgttcttcactggcctggttgactttatgcacctggaccctaagaaagccagaacatat
ttctcaaatcagccagtacgggcctgtgtcctctgtgtccatcctcggaccagagctgta
cggctgagcctgcgtgctgtcttcctgcagcccgggcgtccactcacccggctttcttgc
cagcagctgggagctgtactggatgatgttcctgtccagggctttttcggcaatgccggg
gccaccttcaggctgacggatggggctctggcctatgcccggctcagccatctctccaat
tctaagaaagtcttcaaacctgagaccttcaagccagggaacactcacaagtgtagaatc
atcgactacagccaaatggatgaactggctttgctctctctgcggacgtctgttattgaa
gctcagttccttagttatcgtgacatcaaacctggggccttggtaaagggcaaagtgatg
accgtaaagccatacgggatgctggtgaaggtgggcaggcaaatcagggccctggtgcct
cccatgcacctggccgacatccttatgaagaatccggagaagaagtaccacgctggggat
gaggtcaagtgccgggttttgctttgtgaccctgaagccaggaagctgatgatgaccctg
aagaaaacactggttgagtccaaactgcctgccattacctgctatgccgatgctaagcct
ggtctgcagacacacggctttatcctcagggtcaaggactacggctgcattgtgaagttc
tacaatgacgtgcagggactggtgcccaggcatgagctcagtgccgcgtatatccctgac
ccagagagtgtcttttacactggccaggtggtgaaggttgcagttttgaactgtgagcca
tccaaagagaggatgctcttgtccttcaagctgtcaagtgatccgaaggaagaatgtgtg
ggacacagtcagaagaaaaaaaaagccattaacgccgggcagttggtggatgtgaaggtt
ctggagaagaccaaagatgggctgcaggtggctgtcctgcctcacaacgtccccggcttc
cttcccacgtctcatctgtcagaccacgtcaccaacggcccactgttgcattgctggctc
caggcaggcgacacccttcacagagtcctgtgtctgagcgagggtgaggggcgtgttctc
ctttgcaggaagccagctttggtgtctgcagtagagggtggccaggatcccaagagcttc
tcagaaatccatcctggaatgctgctcgttggttttgtgaagaacatcaaggactatggt
gtgttcgtccagttcccgtcaggccttagtggactggctcccaaagctatcatgagtgac
aagtttgtgacctccacaagtgaccactttgtcgaggggcagacggtggttgctaaggtg
accaacgtggacgaggagaagcagcggatgctgctgtcgctgcggctgtcggactgcact
ctggaggacctggccaccaccagcctccgcctcctgagccagtgcctggaggagcggcag
ggcgtccgtagcctcatgagcaaccgagactctgtgttgatgcagacgctggctgagatg
accccagggatggtccttgacctagaggtgcaggaggtgttgggagacggctctgtactg
ttcagtgagggcccagtgcccggcctggtcctaagagccagcaagtatcatcgggcaggg
caggaggtggaatctgggcagaaacagaaggttgcggtcttaaatgttgatatgttgaag
ttggaagtacatgtttccctctgccgcgatttggtgaagagaaaagctaaacagctgaag
aaaggcagtgagcaccaggcgattgtgcagcacttggaggaaccctttgcccttgcctcc
ttggtagagactggccagctggcagctttctccctgacctctcacctcaacgacaccttc
cgctttgattcagagaagttgcaggtgggacagggtgtctccctaaccctccagaccaca
gaaccaggagtgacgggtcttcttttggccgttgaggggccagctgctaagaggaccatg
agacagacccggaaggactctgagacggtcgacgaggatgaggaagtagatccagctctg
gttttagggactgttaggaagcacaccctgtccattggggacgtggtcacagggaccgtc
aagtccattaagcccacccatgtggttgtgaccctggaagatggcatcattggctgcatc
catgcctcccacattctagatgatgttccagtgggcacatctcctactgccaagctgcaa
gttggaaagaaggtcactgcccgagtgattggcgggagagacatgaagacatttaagttt
ctcccaataagtcatcccagatttattcgaaccatcccggagctgagtgttcggccaagt
gagctggagaaggatggccacactgctctcaacactcattctgttagccccttggagaag
attaaacagtaccaggctggtcagactgtgacttgcttcttgaagaagtacaacgtggtt
aagaaatggcttgaggtggacattgctccagacatccgggggagaattcccttactgctc
acttctcttagcttcaaggttctgaaacatccagataagaagttccgggttggccaggcc
ctgaaggccaccgtggttggcccagattcctccaaggccttcttgtgtctttcactcata
ggtcctcacaagctcgagaaaggggaagtggccatgggccgcgtggtgaaggtgcttccc
aaggagggactgaccgtctcgttccccttcgggaagatcggannagnnnnnnnnnnctcc
tactcagagacgcccctggaaaactttaccccacagaagattgtcaggtgttatgtgctg
tccgctacaggccctgtattgactttgtcactgcgatcgtccaggacgaacccggagacg
aaaagcaaaataacagatcctgagattaactccatccaggatattgaggaagggcagctc
ctgaggggctacgtgaagtccatccagccgtccggtgtgctcttaggccttggcccctca
gttacaggtttggcccaatacccacatgtctcccagtacagcctgtcccagaatgcccct
gatgacaggtctctccccgaaggcaagctgctcacagccaaggtcctaagcctgaaccgc
cgggagaacctggtagagctgtcaatccccgccgaggacactggaaagccggacgtgttt
tctgcctccctgggactgccacttgcgaagcgagaggggagggaaacggaggcagaggag
agagaccacgaaggagaagagaaggcggagaggaagaatcagaaacagaacgagaagagg
actggaagggggcgggagggcgcacagctgcccggcaagaagaaagagccccgggagccc
cgggcggataagctgggcaagcggccacgcccggagtctggcagtgagcaggaaggcggg
aacaagaggcagaggagagctgccccgcccgaggaggacgacagcggtgtggaagtgtac
taccgggagggacaagaggaggtggaggagacgggtgtgcggccccaggagaagcagacc
aggccggcagaagcaccccggctgcagctgtcttccggcttcgcttgggatgtggagctg
gacaccctgaccccggccttgccacctcgcgaagagagctccgacagcgaggaggacgag
aagctagagcaggccacgcagcagaagaaaagcaggaaggaaagggagctggagaagcag
aaggcagagaaagagctgtcccgcatcgaggaggcgctgatggatcccgggcggcagccg
gagtcagcagatgacttcgaccgactcgtgctgagctcccccaacagctccatcctgtgg
ctgcagtacatggccttccacctgcaggccacagagatcgagaaggcccgggccgtggcc
gagagggcgctcaagaccatctccttcagagaggagcaggagaagctgaacgtgtgggtg
gcccagctgaacctagaaaacatgtacggctcccaggggtcactgaccaaggtcttcgag
cgggccgtgcagtacaacgagcctctcaaggtctttctccatctggctgacatctacacc
aagtcagagaaattccaggaagctggtgaactttacaaccggatgctgaaacgtttcagg
caggagaaagctgtctggatcaaatacggcgcctttcttctgcggaggggccaggctggg
gccagtcaccgcgtgatgcagcgagccctcgagtgcctgcctaagaaagagcacgtggat
gtgattgccaagtttgcgcagcttgagttccagctgggggatgcggagcgcgccaaagcc
attttcgagaacacgctgagcacctacccaaagcgcacagatgtctggtcggtctacatc
gacatgatcatcaaacatggcagccagaaggaagtccggggcatcttcgaacgggtcatt
cacctgagcctggcccccaagcgaatgaagttcttcttcaagcgctacctggactacgag
aagcaacacggcaccgagaaggacgtgcaggcagtaaaggcgaaggccctggaatacgtg
gaggctaagagctccatgtgggaggactag
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integrated database retrieval system
