Lipotes vexillifer (Yangtze River dolphin): 103084702
Help
Entry
103084702 CDS
T03090
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve03013
Nucleocytoplasmic transport
lve03015
mRNA surveillance pathway
lve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103084702 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
103084702 (DDX39B)
03015 mRNA surveillance pathway
103084702 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lve03019
]
103084702 (DDX39B)
03041 Spliceosome [BR:
lve03041
]
103084702 (DDX39B)
Enzymes [BR:
lve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103084702 (DDX39B)
Messenger RNA biogenesis [BR:
lve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103084702 (DDX39B)
Spliceosome [BR:
lve03041
]
Complex C
Other components
EJC/TREX
103084702 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103084702 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
103084702
NCBI-ProteinID:
XP_007459648
UniProt:
A0A340XDW5
LinkDB
All DBs
Position
Unknown
AA seq
522 aa
AA seq
DB search
MGRMLASFMPFVTSSSGGVRSGLKKIFFSTQAFSKGNPGTRGTIEPWKVLLPVPYVCAVV
RREAGVEGSREPEVKADSFFRRCYRRHTPSPCSVMAENDVDNELLDYEDDEVETAAGGDG
AEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVL
CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA
VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD
MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY
VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER
LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL
AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggggaggatgctagcttcctttatgccttttgttactagtagtagtggaggagttaga
agtggcttaaaaaaaattttcttttccacacaggcattttctaaaggcaaccctggaacg
cgcggaactatagaaccgtggaaggtccttcttccggtcccttacgtctgcgcggtcgta
aggcgggaggccggggtagagggaagccgggaaccggaagtgaaggcagattccttcttt
cgtcgctgttaccgccgccatacgccttcgccttgctcagttatggcagagaacgatgtg
gacaacgagctcttggattatgaagatgatgaggtggagacagcagctgggggagatggg
gctgaggcccctgccaagaaggatgtcaagggctcctacgtctccattcacagctctggc
tttcgtgacttcctgctcaagccagagttgctccgggccattgttgactgtggctttgag
catccatcagaagtccagcatgaatgcatccctcaggccatcctgggaatggatgtccta
tgccaggccaagtcaggcatgggaaagacagcggtgtttgtgctggctacactgcaacag
ctggagccagttactgggcaggtgtctgtactggtgatgtgtcacactcgggagttggct
tttcagatcagcaaggaatatgaacgcttctctaaatacatgcccaacgtcaaggtcgca
gtgttttttggtggtctgtctatcaagaaagatgaagaggtgctgaagaagaactgcccg
catatcgtcgtggggacccctggccgcatcctagccctggctcgaaataagagcctcaat
ctcaaacacattaaacactttatcttggatgaatgcgataagatgcttgaacagctcgac
atgcgtcgggatgtccaggaaatttttcgcatgaccccccatgagaagcaggtcatgatg
ttcagtgctaccttgagcaaagagattcgcccagtctgccgcaagttcatgcaagaccca
atggagatcttcgtggatgatgagacgaagctgacgctgcatgggttgcagcagtactac
gtgaaactgaaggacaacgagaagaaccggaagctctttgaccttctggatgtccttgaa
ttcaaccaggtggtgatatttgtgaagtctgtgcagcgttgcattgccctggcccagctc
ctggtggagcagaacttcccagctattgccatccaccgtgggatgcctcaggaggagagg
ctttctcggtatcagcagtttaaagattttcaacgacgaattcttgtggctaccaacctg
tttggccgaggcatggacatcgagcgggtgaacattgcctttaactacgacatgcctgag
gattctgacacctacctgcatcgggtggccagagcaggccggtttggcaccaagggcttg
gccatcacgtttgtgtcagatgagaatgatgccaagattctcaatgatgtgcaggatcgc
tttgaagtcaatattagtgagctgcctgatgagatagacatctcctcctacattgaacag
acgcggtag
DBGET
integrated database retrieval system
