Lipotes vexillifer (Yangtze River dolphin): 103085062
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Entry
103085062 CDS
T03090
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve03020
RNA polymerase
lve03420
Nucleotide excision repair
lve05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
103085062 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
103085062 (POLR2A)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
103085062 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lve03021
]
103085062 (POLR2A)
03400 DNA repair and recombination proteins [BR:
lve03400
]
103085062 (POLR2A)
Enzymes [BR:
lve01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
103085062 (POLR2A)
Transcription machinery [BR:
lve03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
103085062 (POLR2A)
DNA repair and recombination proteins [BR:
lve03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
103085062 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
103085062
NCBI-ProteinID:
XP_007457833
UniProt:
A0A340X8C7
LinkDB
All DBs
Position
Unknown
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDVVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcatgggggtggccccccctccggggacagcgcatgcccgctgcgcaccatcaagaga
gtgcagttcggagtcctcagtccggatgaactgaaacgaatgtctgtgacagagggcggc
atcaaatacccagagaccaccgagggaggccgccccaagcttggggggctgatggatccg
aggcagggggtgattgagaggactggccgctgccaaacctgtgcaggaaacatgacagag
tgtcctggccactttggccacattgagctggccaaacctgtgttccatgtcggcttcctg
gtcaagacaatgaaagttttgcgctgcgtctgtttcttctgctccaaattgcttgtggac
tctaacaacccaaagatcaaggacattttggctaagtccaaggggcagcccaagaagcgg
ctcacacacgtctatgacctctgcaagggcaaaaacatctgtgagggcggagaggagatg
gacaacaagttcggtgtggagcagcctgagggcgatgaggatttgaccaaagaaaagggc
cacggcggctgtgggcggtaccagcccaggatccggcgctccggcctggagctgtacgca
gagtggaagcacgtcaacgaggactctcaggagaagaagatcctgctgagtcctgagcgg
gtgcacgagatcttcaaacgcatctcagatgaggagtgcttcgtcctgggcatggagcct
cgctacgcccggcccgagtggatgattgtcactgtgctgcccgtgcccccgctctccgtg
cggcctgctgttgtgatgcagggctctgcccgcaaccaggatgacctgacacacaaactg
gccgatatcgtgaagatcaacaatcagcttcggcgcaacgagcagaacggtgcggccgcg
catgtcatcgctgaggacgtgaagctcctccagttccacgtggccaccatggtggacaac
gagctgcctggcttgcctcgtgccatgcagaaatctgggcgtcccctcaagtccctgaag
cagcggttgaagggcaaggaaggccgtgtgcgcgggaacctgatgggcaagcgggtggac
ttctcggcccgcactgtcatcacccccgaccccaacctctccattgaccaggttggcgtg
cctcgctccattgccgccaatatgacctttgcagagatcgtcacccccttcaacattgac
agacttcaggaactagtgcgcagggggaacagccagtacccaggggccaagtacatcatc
cgggacaacggtgatcgcattgacctgcgtttccaccccaaacccagtgaccttcacctg
cagactggctataaggtggaacggcacatgtgcgatggggacattgttatcttcaaccgg
cagccaactttgcacaaaatgtccatgatgggacatcgggttcgcatcctgccctggtct
acttttcgcttgaatcttagtgtgacaactccatacaatgctgattttgatggggatgag
atgaacttgcacctgccacagtccctggagacgcgggctgagatccaggagctcgccatg
gtgccacgcatgattgtcaccccccagagcaatcgcccagttatgggcattgtgcaggac
acgctgaccgcagtgcgcaaattcaccaagagggacgttttcctggagcggggggaggtg
atgaacctcctgatgttcctgtccacgtgggacggcaaggtcccacagccagccatcctg
aagccccggcccctgtggacagggaagcagatcttctctctcatcatacccggccacatc
aactgtatccgcacccacagcacccatcccgatgatgaggatagtggcccttacaagcac
atctctcctggagacaccaaggtggtggtggagaacggggagctgatcatgggcatcctg
tgtaagaagtctttgggcacatcagctggctctctggtccacatctcttatctagagatg
ggtcatgacatcacccgcctcttctactccaacattcagactgtcattaacaactggctc
ctcattgagggtcataccattggcattggggactccattgctgattctaagacttaccaa
gacattcagaacactattaagaaggccaagcaggatgtaatagaggtcatcgagaaggcg
cataacaacgagctggagcccaccccggggaacactctgcggcagacctttgagaaccag
gtgaaccgcattctcaacgatgcccgagacaagactggctcctctgcccagaaatccctg
tctgaatacaacaactttaagtcaatggtggtgtccggggctaaaggttccaagatcaac
atctcccaggtcattgctgtcgtcgggcagcagaacgtggagggcaagcggatcccgttt
gggttcaagcaccggactctgcctcacttcatcaaagatgactatgggcctgagagccgt
ggcttcgtggagaactcctacctggccggcctcacgcccaccgagttcttcttccatgcc
atggggggtcgtgaggggctcatcgacacagctgtcaagactgctgagactggatacatc
cagcggcggctgatcaaatccatggagtcggtgatggtgaagtatgacgccaccgtgcgg
aactccatcaatcaggtggtacagctgcgctacggcgaagacgggctggcgggcgagagc
gttgagttccagaacctggctaccctcaagccttccaacaaggctttcgagaagaagttc
cgctttgattataccaatgagagggccctgcggcgcaccctgcaggaggacgtggtgaag
gacgtgctgagcaacgcacacattcagaatgagctggagcgagaatttgagcggatgcgt
gaggacagggaggtgctcagggtcatcttcccaactggtgacagcaaggttgtcctcccc
tgtaacctgctgcgcatgatctggaacgctcagaagatcttccacatcaaccctcgcctt
ccctctgacctgcaccccatcaaggtggtagagggtgtcaaggagctgagcaagaagctg
gtgattgtgaatggggacgacccactgagccggcaggcccaggagaacgccaccctgctc
ttcaacatccacctgcggtccacgctgtgctcccgccgcatggctgaggagtttcggctc
agcggagaggccttcgactggctgctcggagagatcgagtccaagttcaaccaagccatt
gcccatcctggggaaatggtgggagctctggctgcacagtcccttggagaacctgccacc
cagatgactctgaacaccttccactatgctggtgtgtccgccaagaatgtgacactgggt
gtgccccgacttaaggagctcatcaacatttccaagaagccaaagaccccctcacttact
gtcttcctgctgggccagtctgctcgagatgctgagagagccaaggatattctgtgccgc
ctggaacatacaacgctgaggaaggtgactgccaacacggccatctactatgaccccaac
ccccagagcacggtggtggcagaggatcaggagtgggtgaatgtctactatgagatgcct
gactttgatgtggcccgaatctccccctggcttttgcgggtggagctggaccggaagcac
atgactgatcggaagctgaccatggagcagattgccgagaagatcaatgctggtttcggt
gatgacttgaactgcatctttaacgatgataatgcagagaagctggtgctccgtatccgc
atcatgaacagtgatgaaaacaagatgcaagaggaagaagaggtggtggacaagatggat
gacgatgtcttcctgcgctgcatcgagtccaacatgctgacagatatgaccctgcagggc
atcgagcagatcagcaaggtgtacatgcacttgccgcagacggacaacaagaagaagatc
atcatcacagaggacggggagttcaaggccttgcaggagtggatcctggagacggatggt
gtgagcctcatgcgggtgctgagcgagaaggacgtggaccctgtgcgcaccacgtccaac
gacatcgtggagatcttcacggtgctgggcatagaagccgtgcggaaggccctggagcgg
gagctgtaccacgtcatctccttcgatggttcctacgtcaattaccggcacttggctctc
ctgtgtgataccatgacctgtcgtggccacttgatggccatcacccgacacggagtcaac
cgccaggataccggacctctcatgaagtgctcctttgaggaaacggtggatgtgcttatg
gaagcagctgcacatggagagagcgaccccatgaagggggtgtctgagaacattatgctg
ggccagctggctccagccggcactggctgttttgacctcctgctcgatgcagagaagtgc
aaatatggcatggagatccccaccaacatccccggcttgggggctgctggacccaccggc
atgttcttcggctcggcccccagtcccatgggaggaatttctccagccatgacaccctgg
aaccagggcgcaaccccagcctacggcgcctggtcccccagtgttgggagtgggatgacc
ccgggggcagcaggcttctctcccagtgctgcttcagatgccagtggcttcagccctggt
tactccccggcctggtctcccacgccgggttccccgggctcccctggcccctcaagcccg
tatattccctcaccagggggtgccatgtctcccagctactccccgacgtcgcctgcctac
gagccccgctcccctgggggctacacgccccagagtccctcttactcccccacttcaccc
tcctactcccctacgtctccgtcctattctccaaccagccccaactacagccccacgtca
cccagctactccccgacctcgcccagctactccccaacctcgcccagctactccccgacc
tcgcccagctactccccgacctcgcccagctactccccgacctcacccagctactcgccc
acgtccccaagctactcgcccacctctcccagctactcgccaacctctcccagctactcg
cccacctctcccagttactcgccaacttcacccagctactcgcccacctcacctagctac
tctccaacatctccaagctattcgccgacatcaccaagctactcaccaacttccccaagt
tactcgcccaccagccctaactattctccaaccagccccaattacaccccgacgtcaccc
agctatagcccaacatcccccagctactcacctactagtcccaactacacaccaacgagc
cccaactacagcccaacctctccaagctactctccgacttcacccagctactccccgacc
tcgccaagctactccccttcgagcccacgatacacaccacagtctcccacctataccccg
agctcacccagctacagccccagctcgcccagctacagcccgacttcaccgaagtacacc
ccaaccagtccttcctacagccccagctcaccggagtacaccccgacctctcccaagtac
tcacctaccagcccgaaatattcgcccacctcccccaagtactctccgaccagccccacc
tactcacccaccactccaaaatactcgccgacgtctcctacttactcaccaacctctccg
gtctacaccccaacctcccccaagtactcacccaccagccccacctactcgcccacctcc
cccaagtactcacccaccagccccacctactcgcccacttcccccaaaggctcaacctac
tcgcccacctcccctggctactcgcccaccagccccacctatagcctcaccagcccagcc
atcagtcccgatgacagtgatgaggagaactga
DBGET
integrated database retrieval system
