Lipotes vexillifer (Yangtze River dolphin): 103086592
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Entry
103086592 CDS
T03090
Symbol
PTCH1
Name
(RefSeq) protein patched homolog 1 isoform X1
KO
K06225
patched 1
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve04024
cAMP signaling pathway
lve04340
Hedgehog signaling pathway
lve04360
Axon guidance
lve05200
Pathways in cancer
lve05205
Proteoglycans in cancer
lve05217
Basal cell carcinoma
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
103086592 (PTCH1)
04024 cAMP signaling pathway
103086592 (PTCH1)
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
103086592 (PTCH1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
103086592 (PTCH1)
05205 Proteoglycans in cancer
103086592 (PTCH1)
09162 Cancer: specific types
05217 Basal cell carcinoma
103086592 (PTCH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sterol-sensing
Patched
Motif
Other DBs
NCBI-GeneID:
103086592
NCBI-ProteinID:
XP_007448349
UniProt:
A0A340WMN5
LinkDB
All DBs
Position
Unknown
AA seq
1448 aa
AA seq
DB search
MASAGNAAEPQDRGGGGGSCSGDPGRPAGGGRRRRTGGLRRNAAPDWDYLHRPSYCDAAF
ALEQISKGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAAN
LETNVEELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPKEDGANVLTTEALRQHLD
SALQASRVHVYMYNRQWKLEHLCYKSGELITETGYMDQIIEYLYPCLIITPLDCFWEGAK
LQSGTAYLLGKPPLQWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPA
DPDCPATAPNKNATKPLDMALVLNGGCHGLSRKYMHWQEELIVGGTVKNSTGKLVSAHAL
QTMFQLMTPKQMYEHFKGYEYVSHINWNEDKAAAILEAWQRTYVEVVHQSVTQNSTQKVL
SFTTTTLDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCSKSQGAVGLAGVLLVALS
VAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGEC
LKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDL
YRREDRRLDIFCCFTSPCVSRVIQVEPQAYTETHNSTRYSPPPPYSSHSFAHETQITMQS
TVQLRTEYDPHTHVYYTTAEPRSEISVQPVTVAQDTLSCQSPESTSSTRDLLSQFSDSSL
HCLEPPCSRWTLSSFAEKHYAPFLLKPKAKVVVIFLFLGLLGVSLYGTTRVRDGLDLTDI
VPRETREYDFIAAQFKYFSFYNMYIVTQKADYPNIQHLLYDLHKSFSNVKYVMLEENKQL
PKMWLHYFRDWLQGLQDAFDSDWETGRIMPNNYKNGSDDGVLAYKLLVQTGSRDSPSTIS
QLTKRRLVDADGIINPNAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETR
LRIPAAEPIEYAQFPFYLNGLRDTSDFVEAIEKVRTICSNYTSLGLSSYPNGYPFLFWEQ
YIGLRHWLLLSISVVLACTFLVCAVFLLNPWTAGIIVTVLALMTVELFGMMGLIGIKLSA
VPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAMLALEHMFAPVLDGAVSTLLGVLML
AGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGPYPEVSPANGLNRLPTPSPEP
PPSVVRFALPPGHTNNGSDSSDSEYSSQTTVSGISEELRHYEAQQGAGGPSHQVIVEATE
NPVFARSTVVHPEPRQHPPSNPRQQPHLDSGSLPPGRPGQQPRREAPRECLRPPPYRPRR
DAFEISTDGHSGPSNRDRTGPRGARSHNPRHPAFTATGSSVPSYCQPITTVTASASVTVA
VHPPPGPGRNPRGGLRPGYEDYPETDHGLFEDPHVPFNVRCERRDPKVEVIELQDVECEE
RRRGSSSN
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggctggtaacgctgccgagccccaggaccgcggcggcggcggcggcagctgc
agcggggacccgggccggccggccggtggcgggaggcgcagaaggaccggggggctgcgt
cgcaacgccgcgccggactgggactatctgcaccggcccagctactgcgacgccgccttc
gctctggagcagatttccaaggggaaagctactggccggaaagcgccgctgtggctgaga
gcgaagtttcagagactcctatttaaactgggttgttacattcaaaaaaactgcggcaag
ttcttggttgtaggcctcctcatatttggggccttcgctgtgggattaaaggcagctaat
ctcgagaccaacgtggaggagctgtgggtggaagttggtgggcgagtaagtcgtgaatta
aattacactcgccagaagattggagaagaggctatgtttaatcctcaactcatgattcag
acccccaaggaagacggtgctaatgtcctgaccacggaggcactccgacagcacctggac
tcggcgctccaggccagccgggtccatgtatatatgtataacaggcaatggaaattggaa
catttgtgttataaatctggagaacttatcacagaaacaggttacatggatcagataata
gaatatctttacccttgtttaattattacacctttggactgcttctgggaaggggcgaag
ttacagtctgggacagcatacctactaggtaagcctcctttgcagtggacaaactttgac
cctttggaattcctagaagagttaaagaaaataaactatcaagtggacagctgggaggaa
atgctgaataaggctgaagttggtcatggttacatggaccggccctgcctcaatccagct
gatccagactgccctgccacagcccccaacaaaaatgcaaccaaacctcttgatatggcc
cttgttttgaatggtgggtgtcatggattatccagaaagtatatgcactggcaggaggaa
ctgattgtgggtggcacagtcaagaacagcactggaaagcttgtcagtgcccacgccttg
cagaccatgtttcagttaatgactcccaagcaaatgtacgaacacttcaagggttatgag
tatgtctcgcacatcaactggaacgaggacaaggcagcagccatcctggaggcttggcag
aggacgtatgtggaggtagttcatcaaagcgtcactcagaactccactcagaaggtgctt
tcctttaccacgacgaccctggacgacatcctcaagtccttctctgatgtcagcgtcatc
cgagtggccagtggctatttactgatgcttgcctatgcctgtttaaccatgctgcgctgg
gactgctccaagtcccagggtgccgtggggctggctggtgtcctgttggttgcactgtca
gtggctgcaggattgggcctgtgctcattgatcgggatttcctttaatgctgcaacaact
caggttttgccatttcttgctcttggcgttggtgtggatgatgttttccttctggcgcat
gcatttagtgaaacaggacagaataaaagaatcccttttgaggacaggaccggggagtgt
ctcaagcgcacgggagccagcgtggccctcacatccatcagcaacgtcacggccttcttt
atggctgcgttgatcccgattcccgcactgcgggcgttctcccttcaggcggctgtagta
gtggtattcaattttgctatggttctgctgatttttcctgcaattctcagcatggatttg
tatcgacgtgaggacaggagattggatattttctgctgttttacaagcccctgtgtcagc
agagtgattcaggttgaaccccaggcctacacagagactcacaatagcacccgctacagc
cccccgcccccctacagcagccacagcttcgcccacgaaacccagatcaccatgcaatcc
acggtgcagctccgcacagagtacgacccacacacgcacgtgtactacaccactgccgag
ccgcgctccgagatctccgtgcagcccgtcaccgtggcccaggacacgctcagctgccag
agccccgagagcaccagctccacgagggacctgctctcccagttctctgactctagcctc
cactgccttgagcccccctgcagcaggtggacactctcatcttttgccgagaagcactat
gcccctttcctcttgaaaccaaaagccaaggtcgtggtgatcttccttttcctgggcctg
ctgggggtcagcctttatgggaccacccgagtgcgtgatgggctggaccttacagacatt
gtgcctcgggaaactagagaatatgactttatcgctgcacagttcaaatacttctctttc
tacaacatgtatatagtcactcagaaggccgactacccgaatatccagcacttactttac
gaccttcataagagtttcagtaacgtgaagtatgtcatgttggaagaaaataaacagctt
cccaaaatgtggctgcattacttcagagactggctccaaggacttcaggatgcatttgac
agtgactgggaaactgggagaatcatgccaaacaattacaaaaatggatcagatgatggg
gtccttgcctacaaactcctggtgcaaaccggcagccgtgatagcccatcgaccatcagc
cagctcactaaacggcgcctggtggatgcagacggcatcattaatcccaacgctttctac
atctacctgaccgcttgggtcagcaacgaccccgtggcttacgccgcctcccaagccaac
atccggcctcaccgtcccgagtgggtccacgacaaagccgactacatgccagaaaccagg
ctgagaatcccagcagcagagcccatcgaatacgctcagttccctttctacctcaacggc
ttgcgtgacacctcagacttcgttgaagcaattgaaaaagtcagaacgatctgcagcaac
tacacaagcctggggctctccagctaccccaacggctaccccttcctcttctgggagcag
tacatcggcctccgccactggctcctcctgtccatcagcgtggtgctggcctgcacgttc
ctcgtgtgtgctgtcttcctcctaaacccctggacggccgggatcattgtgacagtcttg
gctttgatgacggtcgagctgtttggcatgatgggcctcattggaatcaagctgagtgcc
gtgcctgtggtcatcttgatcgcttccgtcggcatcggagtagagttcaccgttcacgtt
gctctggcctttctaacagccattggcgataagaaccgcagggccatgctcgccctggag
cacatgtttgcacctgttctggatggtgctgtttccactctgttaggagtgctgatgctt
gcaggatccgagtttgatttcattgtcaggtatttctttgctgtcctggcaatcctaaca
atcctgggtgttctcaatggactggttttactgccagtccttttgtccttctttggaccg
tatcctgaggtgtctccagccaacgggctgaaccggctgcccaccccttcccctgagcca
ccccccagtgtggtccggtttgctctgccccctggtcacacaaacaacgggtctgattcc
tctgactcggagtacagttctcagacgacggtgtcgggcatcagtgaggagcttcggcac
tacgaggcccagcagggcgccgggggcccttcccaccaagtgatcgtggaagccaccgag
aaccctgtcttcgcccgctccaccgtggtccatcctgaaccgaggcagcacccaccctcc
aaccctcgacagcagccccatctggactcagggtccctgccacccggacggccaggccag
cagcccagaagagaggcccccagagaatgcttgaggccgcccccttacagaccgcgcaga
gacgctttcgaaatttctactgacgggcattctggccctagcaatagggaccgcacgggc
ccccggggagcccgttctcacaaccctcggcacccagcgttcactgccacgggcagctcc
gtgcccagctactgccagcccatcaccaccgtgacggcctcggcgtccgtgactgttgca
gtgcaccccccgcccgggcccggtcggaacccccgaggggggcttcgcccgggctacgag
gactaccccgagactgaccacgggctgtttgaggacccccacgtgccttttaacgtccgt
tgcgagaggagggatcccaaggtggaggtcattgagctacaggacgtggaatgtgaggag
aggcgccggggcagcagctccaactga
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integrated database retrieval system
