Lipotes vexillifer (Yangtze River dolphin): 103088025
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Entry
103088025 CDS
T03090
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve01524
Platinum drug resistance
lve03430
Mismatch repair
lve05200
Pathways in cancer
lve05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
103088025 (MSH2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
103088025 (MSH2)
09162 Cancer: specific types
05210 Colorectal cancer
103088025 (MSH2)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
103088025 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lve03400
]
103088025 (MSH2)
DNA repair and recombination proteins [BR:
lve03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
103088025 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
103088025
NCBI-ProteinID:
XP_007460038
UniProt:
A0A340XF26
LinkDB
All DBs
Position
Unknown
AA seq
934 aa
AA seq
DB search
MAVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHREDALLAAREVFKT
QGVLKYMGPAGAKTLESVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLA
FKASPGNLSQFEDILFGNNDMSASIGVVGVKMSTVDGQRQVGVGYVDSIQRKLGLCEFPD
NDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQVIQRGGILITERKRADFSTKDIYQD
LNRLLKGKKGEQVNSAVLPEMENQVAVSSLCAVIKFLELLSDDSNFGQFELATFDFSQYM
KLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERL
NLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQA
LEKYEGKHQALLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSE
LREIMDDLEKKMQSTLISAARDLGLDPGKQIKLDSNAQFGYYFRVTCKEEKVLRNNKNFS
TVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLA
QLDAVVSFAHVSNGAPVPYVRPVILEKGQGRIILKASRHACVEVQDEVAFIPNDVHFEKD
KQVFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLK
GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATRIRAFCMF
ATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHV
IECAKQKALELEEFQNIGKPQEYDEMEPAAKRCYLEREQGEKIIQEFLSKVKQVPFTEMS
EENIVMKLKQLKAEVIAKNNRFVNEIISRVKVTT
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaaggagacgctgcagctggagagcgcggccgaggtcggcttcgtc
cgcttcttccagggcatgccggagaagccgaccaccacggtgcgcctcttcgaccggggc
gacttctacacggcgcaccgggaggacgcgctgctggccgcccgggaggtgttcaagacc
cagggggtgctcaagtacatggggccggcaggagcaaagactctggagagtgttgtgctt
agtaaaatgaattttgagtcttttgtaaaagatcttcttctagttcgtcagtacagagtt
gaagtttataagaatagagctggaaataaggcctccaaggagaatgattggtatttggca
tttaaggcttctccaggtaatctttctcagtttgaagacatcctctttggtaacaacgat
atgtcagcttccattggtgttgtgggtgttaaaatgtctacagttgatggccaaagacag
gttggagttgggtacgttgactccatacagaggaagctaggactgtgtgagtttcctgat
aatgatcaattctccaatctggaggctctcctgattcagattggaccaaaggaatgtgtt
ttaccaggaggagagactgctggagacatgggaaaactgaggcaggttattcagagagga
ggaattctgatcacagaaagaaaaagagctgacttttccacaaaagatatttatcaggac
ctcaaccggttgttgaaaggcaaaaagggagaacaggtgaatagtgctgtgttgccagaa
atggagaatcaggttgcagtttcttcattgtgtgcagtaatcaagtttctagaactctta
tcagatgattcaaactttggacagtttgaactggctacttttgacttcagccagtacatg
aaattggatattgcagcagtcagagcccttaaccttttccagggttccgttgaagatact
actggctctcagtctctggctgcattgctgaataaatgcaaaacccctcaaggacaaaga
ctggttaaccaatggattaagcagcctctcatggacaagaacagaatagaagagagatta
aatttagtcgaagcttttgtagaagatgcagaattgaggcagagtttacaagaagattta
cttcgtcgatttccagatcttaaccgacttgccaagaaatttcaaagacaagcagcaaac
ttacaagattgttatcgactctatcagggtataaatcaactccctaatgttattcaggct
ctggaaaaatatgaaggaaaacatcaggcattgttgttggcagtttttgtgactcctctt
attgatcttcgttctgatttctccaagtttcaggaaatgatagaaacaactttagatatg
gatcaggtggaaaaccatgaattcctcgtaaaaccttcattcgatcctaacttgagtgaa
ttaagagaaataatggatgacttagaaaagaagatgcagtcaacattaataagtgcagct
agagatctaggcttggatcctggcaaacagattaaactggattccaacgcacaatttgga
tattattttcgtgtaacatgcaaggaagaaaaagtccttcgtaataataaaaatttcagt
acagtagatatccagaagaatggtgttaaatttaccaacagtaagttgacttctctcaat
gaagagtataccaaaaataaaaccgaatatgaggaagcccaggatgccattgttaaagaa
attgtcaatatttcttcaggctatgtagaaccgatgcagacactaaatgatgtgttagct
cagctagatgctgttgtcagctttgctcatgtgtccaatggagcacctgttccatatgta
cggccggtcattttggagaaaggacaagggagaattatactgaaagcatccagacatgct
tgtgttgaagttcaagatgaagttgcatttattcctaatgatgttcactttgaaaaagat
aaacaggtgttccacatcattactggtcccaacatgggaggtaaatcaacatatattcgt
cagactggggtggtagttctcatggcccagattgggtgttttgtgccatgtgagtcagca
gaagtgtccatcgtggactgcatcttggcccgggtaggggctggtgacagtcagttgaaa
ggagtctccacattcatggctgaaatgttagaaactgcttctattctcaggtctgcaacc
aaagattctttaataatcatagatgaattgggaagaggaacctctacctatgatggattt
gggttagcgtgggctatatcagagtacattgcaacaaggatccgtgctttttgcatgttt
gcaacccattttcatgaacttactgccttggccaatcagataccaactgttaataatcta
catgtcacagcactaactactgaagagaccttaactatgctttatcaggtgaagaaaggt
gtctgtgatcagagttttgggattcacgttgccgagcttgctaatttccccaggcatgta
atagagtgtgctaaacaaaaagccctggaactagaggagtttcagaatattgggaaacca
caggaatatgatgaaatggaaccagcagcaaagaggtgctatctggaaagagagcaaggt
gaaaaaattattcaagagtttttatccaaggtgaagcaagtgccctttactgaaatgtca
gaagaaaacatcgtaatgaagttaaaacagctgaaagctgaggtgatagcaaagaataat
cgttttgtaaatgaaataatttcaagagtaaaggtaactacatga
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