Lipotes vexillifer (Yangtze River dolphin): 103088473
Help
Entry
103088473 CDS
T03090
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103088473 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lve03019
]
103088473 (XAB2)
03041 Spliceosome [BR:
lve03041
]
103088473 (XAB2)
Messenger RNA biogenesis [BR:
lve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
103088473 (XAB2)
Spliceosome [BR:
lve03041
]
Complex B
Other components
Prp19-related factors
103088473 (XAB2)
Complex C
103088473 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_1
TPR_NPHP3
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
103088473
NCBI-ProteinID:
XP_007460660
UniProt:
A0A340XNQ8
LinkDB
All DBs
Position
Unknown
AA seq
853 aa
AA seq
DB search
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLSV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHEGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGQKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVTGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAEQDQPSRAQSKILFVRSDASREELAQLAQQANPEEIELGEDEDEMDLEPNEVRLEQQ
SVPAAVFGSLKED
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgcctctcgaggcccgagcggccggaccttgtcttcgaggaggag
gacctcccctatgaggaggaaatcatgcggaaccaattctccgtcaaatgctggctccgc
tacattgagtttaagcagggtgccccgaagcccagactcaatcagctgtatgaacgggcg
ctgaagctgctgccctgcagctacaaactctggtaccgctacctgaaggcacgccgggca
caggtgaagcatcgctgtgtgaccgaccctgcctacgaagatgtcaacaactgccacgag
agggcctttgtgttcatgcacaagatgccccggctgtggctagattactgccagttcctg
atggaccagggacgcgtcacacacacgcgccgcactttcgaccgtgccctccgagcgttg
cccatcacacagcactctcgtatttggcccttgtacctgcgcttcctgcgctcacacccc
ctgcctgagaccgccgtgcggggctaccggcgcttcctcaagctgagccccgagagtgcc
gaggagtacatcgagtacctcaagtcgagcgaccggctggacgaggccgcacagcgcctg
gccaccgtggtgaatgacgagcgcttcgtgtccaaggccggcaaatccaactaccagctg
tggcacgagctctgcgacctcatctcccagaacccagacaaggtgcagtctctcagtgtg
gacgccatcatccgtgggggcctcacccgcttcaccgaccaactgggcaagctctggtgc
tcgctggccgactactacatccgcagcggtcacttcgagaaggcccgggacgtgtacgag
gaggccatccggaccgtgatgaccgtgcgggacttcacccaggtgtttgacagctatgcc
cagttcgaggagagcatgatcgcggcgaagatggagacggcctcggagctggggcgggag
gaggaggacgacgtggacctggaactgcgcctggctcgctttgagcagctcatcagccgg
cggcccctgctcctcaacagcgtcctgctgcgccagaacccgcaccacgtgcacgagtgg
cacaagcgtgtggccctgcatgagggccgcccgagggagatcattaacacgtacacggag
gccgtgcagactgtggaccccttcaaggccaccggcaagccccacaccctgtgggttgcg
ttcgccaagttttacgaggacaacgggcagctggatgacgcccgcgtcatcctggagaaa
gccaccaaggtgagcttcaagcaggtggacgacctggccagcgtgtggtgcgagtgtggc
gagctggagctccggcacgagaactacgaccaggccttgcggctgctgcgaaaggcgacg
gcgctgcccgcccgccgcgccgagtactttgacggctcggagcccgtgcagaaccgcgta
tacaagtctctgaaggtgtggtcaatgctggccgacctggaggagagcctcggcaccttc
cagtccaccaaagccgtctatgaccgcatcctggacctgcgcatcgccacgccccaaatc
gtcatcaactacgccatgttcctggaggaacacaagtactttgaagagagcttcaaggcg
tacgagcgcggcatctcgctgttcaagtggcccaacgtgtccgacatctggagtacctac
ctgaccaagttcatcgcccgctacgggggccagaagctggagcgggcacgggacctgttt
gagcaggcgctggatggctgccctcccaaatacgcaaagaccctgtacctgctgtatgcg
cagctggaggaggagtggggcttggcccggcacgccatggccgtgtacgagcgcgccacc
agggccgtggagcccgcccagcaatacgacatgttcaacatctacatcaagcgggcggcc
gagatctacggggtcacccacacccgcagcatctatcagaaggccatcgaggtgctgtca
gacgagcacgcccgggagatgtgcctgcggttcgcggacatggagtgcaagctcggggag
attgaccgcgcccgggccatctacagcttctgctcgcagatctgtgacccccggacgacc
ggggccttctggcagacgtggaaggacttcgaggtccggcacggcaacgaagacaccatc
cgggagatgctgcggatccgccgcagcgtgcaggccacgtacaacactcaggtcaacttc
atggcctctcagatgctcaaggtgacaggcagcgccacgggcactgtgtccgacctggcc
cccgggcagagcggcatggacgacatgaagctgctggaacagcgggccgagcagctggcg
gctgaggctgagcaggaccagccctcgcgggcccagagcaagatcctgtttgtgaggagt
gacgcctcccgggaggagctggcccagctggcccagcaggccaacccggaggagatcgag
ctgggcgaggacgaggacgagatggacctggagcccaacgaggtgcgcctggagcagcag
agcgtgccggccgccgtgttcgggagcctgaaggaagactga
DBGET
integrated database retrieval system
