Lipotes vexillifer (Yangtze River dolphin): 103089181
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Entry
103089181 CDS
T03090
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve01524
Platinum drug resistance
lve03430
Mismatch repair
lve05200
Pathways in cancer
lve05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
103089181 (MSH6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
103089181 (MSH6)
09162 Cancer: specific types
05210 Colorectal cancer
103089181 (MSH6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
103089181 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lve03400
]
103089181 (MSH6)
DNA repair and recombination proteins [BR:
lve03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
103089181 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
103089181
NCBI-ProteinID:
XP_007460043
UniProt:
A0A340XF30
LinkDB
All DBs
Position
Unknown
AA seq
1361 aa
AA seq
DB search
MSRQSTLYSFFPKSPALNNASKDPVRASSESAAAAATGASPPSLGGDAAWSEAGPGPGPL
AGSTSRAEARNLNGGLRKSAAPAVPASSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTF
IREKGKSARVHVQFFDDSPTRGWVSRRLLKPYTGSKSKEAQKGGHFYSSKPEILRAMQRA
DEALNKDKIKRLELAVCDEPSEPEEEEETEAGATYASDKSEEENEMESEEEVRPKVQGSR
RSSRQIKKRRVISDSESDIGGSDVEFKPDAKEEGSSDEISSGVGDSDSEGLDSPVKVAPK
RKRMITGNGSLKRKSSRKEMPSATKRATGISSEAKNTLSAFSAPQNSESQAHVSGGCDDS
SRPTIWYHETLEWLKEEKRRDVHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQ
NFDLVIFYKVGKFYELYHMDALTGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYK
VARVEQTETPEMMEARCRKMAHISKYDRVVRREICRVITKGTQTYSVLEGDPSENYSKYL
LSLKEKDDSSSGHARVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKG
NLSVETKMILKGSLSSSLQEGLIPGSQFWDAAKTLRTLLEEGYFTDKLNEDSGVVLPQVL
KGMTSESDSVGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVRA
TGPGAVFAKASQRMVLDAVTLNNLEIFLNGTNGSTEGTLLDKIDTCYTPFGKRLLKQWLC
APLCNPCVISDRLDAIEDLMVVPDKISEVVDLLKKLPDLERLLSKIHNVGSPLKSQNHPD
SRAIMYEETTYSKKKIIDFLSALEGFKVLCKIIGVMEEVIDDFKSEILKQVLTLQTKNPE
GRFPDLTLELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQR
SRIGCRTIVYWGIGRNRYQLEIPENFITRNLPEEYELKSTKKGCKRYWTKTIERKLANLI
NAEERRDVSLKDCMRRLFYNFDKNYKDWQAAVECIAVLDVLLCLANYSRGGDGPMCRPVI
LLPEEDTPPFLDLKGSRHPCITKTFFGDDFIPNDILIGCEEEEENGKAYCVLVTGPNMGG
KSTLMRQAGLLVVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETAS
ILTHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQN
VAVRLGHMACMVENECDDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRK
AREFEKMTQSLRLFREVCLASERSTVDAEAVRKLLTLIEEL
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacagagcacgctgtacagcttcttccccaagtctccagccctgaataatgcc
agcaaagacccggtcagggcctcaagtgaaagcgccgccgccgctgccaccggggcctcc
cccccttccctaggcggggatgcggcctggagcgaggccgggcctgggccggggcccctg
gcgggctccacttcgcgggccgaggcgaggaacctcaacggagggctgcggaagtcggca
gcccctgcggtcccagccagttcttgtgacttctcaccaggtgatttggtttgggccaag
atggagggttacccttggtggccttgcctggtttacaaccacccttttgatggaacattc
atccgtgagaaaggaaagtctgcccgagttcatgtacagttttttgatgacagcccaaca
aggggctgggttagcagaaggctattaaagccatatacaggttcaaagtcaaaggaagcc
cagaaaggaggtcatttctacagttcaaagcctgaaatactcagagcaatgcaacgtgca
gatgaagccttgaataaagacaagattaagaggcttgaattggcagtgtgtgatgagccc
tcagaaccagaggaggaagaagagacggaggcaggtgccacttacgcatcagataagagt
gaagaagaaaatgaaatggagagtgaagaggaagtgaggccaaaggtgcaaggatctagg
cgaagtagccgccagataaaaaagcgaagggtcatatcagactctgagagtgacattggt
ggctctgatgtggaatttaagccagatgctaaggaggaaggaagcagtgatgaaataagc
agtggagtaggggatagtgacagtgaaggcctggacagccctgttaaagttgctccaaag
aggaagagaatgataactggaaatggctccctcaaaaggaaaagttcaaggaaggaaatg
ccctcggccaccaaacgagcaactggcatttcatcagaagccaagaatactttgagtgct
ttctctgcccctcaaaattctgaatcccaagcccacgttagtggaggatgcgatgacagt
agtcgccccaccatctggtatcatgaaactttagagtggcttaaggaggagaagagaaga
gatgtgcacaggaggcgacctgatcaccctgattttgatgcatccacactctatgtgcct
gaggatttccttaattcctgtactcctgggatgagaaagtggtggcagattaagtctcag
aactttgatcttgtcatattttataaggtggggaagttttatgagctataccacatggat
gctcttactggagtcagtgaactagggctggtattcatgaaaggcaactgggcccattct
ggtttccctgaaattgcatttggccgatattcagattccctggtccagaagggctataaa
gtagcacgggtggaacagaccgagaccccggaaatgatggaggcacgatgccgaaagatg
gcacatatatctaagtatgatagagtggtgaggagggagatctgtagggtcattaccaag
ggtacacagacctacagtgtgctggaaggtgacccctcagagaactacagtaagtacctt
cttagcctcaaagaaaaagatgattcttcttctggccacgctcgagtgtatggagtatgt
tttgttgatacctcactagggaagttcttcataggtcagttttcagatgatcgccattgt
tccaggtttaggacgttagtggcacactatcctccagtacaagtcttgtttgagaaagga
aatctctcagtggaaactaagatgattctcaagggttcattgtcctcttctcttcaggaa
ggtctgataccaggttcccagttttgggatgcagccaaaactttgagaactctccttgaa
gaagggtattttacggacaagttaaatgaggacagtggggtggtgttaccccaggtgctt
aaaggtatgacctcagagtctgattctgttgggttgacaccgggagagaagagtgaattg
gccctctctgctcttggtggttgtgtcttctacctcaaaaaatgccttattgatcaggag
cttttatcaatggctaattttgaagaatatattcccttggattctgacacggtccgtgct
acaggacctggtgctgtctttgctaaagccagtcaacgaatggtgctagatgctgtgaca
ttaaacaacttggagatttttctgaatggaacaaatggttccactgaagggaccctgtta
gacaagattgatacttgctatactcccttcggtaaacggctcctaaagcaatggctttgt
gccccactctgtaacccttgtgttatcagtgatcgtctagatgccatagaagacctaatg
gttgtgcctgacaaaatctctgaggttgtagaccttctaaagaagcttccagaccttgag
aggctactgagtaaaattcataatgttggctctcccctgaagagccagaaccacccagat
agcagagctataatgtatgaagaaaccacatacagcaaaaaaaagattattgattttctt
tctgctctggaaggattcaaagtactatgtaaaattataggggttatggaggaagtcatt
gatgacttcaagtctgaaatccttaagcaggtccttactctgcagacaaaaaatcctgaa
ggccgctttcctgatctgactctagaactaaaccgatgggatacagcctttgaccatgaa
aaggctcgaaagactggactgattactcccaaggcaggatttgactctgattatgatcaa
gctcttgctgacataagagaaaatgaacagagcctcctggaatacttggagaaacagcgt
agtagaattggctgtaggaccatagtctactggggaattggtaggaatcgttaccagttg
gaaattcccgaaaatttcatcacccgtaatttgccagaagaatatgagttgaaatctacc
aagaagggctgtaaacgatactggaccaaaacaattgagagaaagttggctaatctgata
aatgctgaagaacggagagatgtatcattaaaggactgcatgcggcgactgttctataac
tttgataaaaattacaaggactggcaggctgctgtggagtgcatcgcagtgttggatgtc
ttattgtgcctggctaactacagtcgagggggtgatggtcctatgtgtcgtccagtaatt
ctgttgccagaagaagatactcctccctttctagaccttaaaggatcacgtcacccctgc
attacgaagactttttttggtgatgactttattccaaatgacattctaataggctgtgag
gaagaggaagaaaatggcaaagcttactgtgtgcttgttactggaccgaatatggggggc
aagtctacgctcatgagacaggctggcctactggttgtaatggcccagatgggttgttat
gtaccagctgaagtgtgtaggctcacaccaatcgatagagtgtttactagacttggtgcc
tcagacagaataatgtcaggtgaaagtacattttttgttgaactgagtgaaactgccagt
atacttacacatgcaacagcacattctctggtgcttgtggatgaattaggaagaggtact
gcaacatttgatgggacagcaatagcaaatgcagttgttaaagaacttgctgagaatata
aagtgtcgtacattgttttctacccactaccattcattagttgaagactattctcaaaat
gttgcagtgcgcctaggacacatggcatgcatggtagaaaatgaatgtgacgatcccagc
caggagactattaccttcctgtataaattcattaaaggagcttgtcctaaaagctatggc
tttaatgcagcaaggcttgctaatcttccagaggaggttattcaaaagggacatagaaaa
gcaagagaatttgagaagatgactcagtcactgcgattatttcgggaagtttgtctggct
agtgaaaggtcgactgtagatgctgaagctgtccgtaagttgctgactttgattgaggaa
ttatag
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