Lipotes vexillifer (Yangtze River dolphin): 103089438
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Entry
103089438 CDS
T03090
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve04151
PI3K-Akt signaling pathway
lve04382
Cornified envelope formation
lve04510
Focal adhesion
lve04512
ECM-receptor interaction
lve04518
Integrin signaling
lve04820
Cytoskeleton in muscle cells
lve04926
Relaxin signaling pathway
lve04933
AGE-RAGE signaling pathway in diabetic complications
lve04974
Protein digestion and absorption
lve05146
Amoebiasis
lve05165
Human papillomavirus infection
lve05200
Pathways in cancer
lve05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
103089438 (COL4A2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103089438 (COL4A2)
04518 Integrin signaling
103089438 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103089438 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
103089438 (COL4A2)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
103089438 (COL4A2)
09154 Digestive system
04974 Protein digestion and absorption
103089438 (COL4A2)
09158 Development and regeneration
04382 Cornified envelope formation
103089438 (COL4A2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
103089438 (COL4A2)
09162 Cancer: specific types
05222 Small cell lung cancer
103089438 (COL4A2)
09172 Infectious disease: viral
05165 Human papillomavirus infection
103089438 (COL4A2)
09174 Infectious disease: parasitic
05146 Amoebiasis
103089438 (COL4A2)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
103089438 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lve04147
]
103089438 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
lve00536
]
103089438 (COL4A2)
Exosome [BR:
lve04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
103089438 (COL4A2)
Glycosaminoglycan binding proteins [BR:
lve00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103089438 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
103089438
NCBI-ProteinID:
XP_007455387
UniProt:
A0A340X5X2
LinkDB
All DBs
Position
Unknown
AA seq
1671 aa
AA seq
DB search
MEGLKKFDVPCGGRDCSAGCQCYPEKGGWGQPGPVGPQGYTGPPGLQGFPGLQGRKGDKG
ERGAPGITGPKGDVGARGVSGFPGADGIPGHPGQGGPRGPPGYDGCNGTVGDAGYPGPSG
PGGFLGPRGPQGPKGQKGEPYALSSEDRDKYRGEAGVPGLVGFQGPPGRPGPVGQMGPVG
APGRAGPPGPPGPKGQPGNRGLGFYGEKGEKGDMGQQGPGGIPPDNSYVERPKNDVILPE
QYKGEKGSEGEPGRKGISIKGEDGIMGFSGVRGAPGFDGEKGSPGQKGSRGPDGYQGPDG
YPGPKGEMGEPGTPGPPAYSPHPSLAKGARGDPGFHGAPGDPGARGESGDLGLPGLPGTS
IGDADEKRGLPGEMGPKGFTGEQGIPALYPGPPGADGKPGLQGPPGFPGPPGPDGFLFGL
KGAEGRVGYPGPSGFPGARGQKGWKGDAGDCQCAEGDQFIGGLPGPPGPKGFPGTNGEPG
RKGSPGDPGQHGIPGFPGFKGAPGGVGPPGPKGMKGDSRTVTTKGERGQPGVPGVPGLKG
DSGIPGRDGLDGFPGLPGSPGDGIKGPSGDAGHPGPPGTKGIPGERGPPGLGLPGPKGER
GFPGDAGLPGPPGFPGPPGAPGTPGQIDCDTGVKRPIGADGQETVQPGCVGGPKGSPGQP
GPPGPPGAKGLRGLPGLSGTDGAPGLKGLPGDPGPEGFPGPPGFVGPRGVKGAVGRPGLD
GLPGPSGLPGPVGPPGDRGLPGEVLGAQPGPRGDTGLPGRSGLKGPPGERGPPGFRGSQG
QQGFPGPSGQPGLPGPPGQHGYPGAPGREGPLGPPGTPGFGGLPGDRGEPGDIGVPGPVG
MKGVSGDRGDPGWQGERGHPGSPGFKGVAGMPGAPGPKGVKGSPGMDGFQGMLGLKGRSG
LPGNKGETGFFGVPGLKGLAGEPGVKGSRGDPGPPGPPPIILPGMKDIKGEKGDEGPMGL
KGYLGLKGLPGMPGIPGLSGVPGLPGKPGYVKGVKGDTGFPGVPGSPGFPGVPGSPGISG
FPGFTGSRGDKGAPGTVGLHGEIGPIGDFGDIGNTIDLPGSPGLKGEGGTAGAPGLKGFF
GEKGSEGDVGFPGITGLAGVQGPPGLKGQTGFPGLTGLQGPQGEPGRAGVPGTKGDYGWP
GSPGLPGLPGLRGIGGLHGLPGTKGFPGSPGADIHGDAGLPGPAGARGDPGEANTLPGPA
GAPGQKGERGVPGERGPVGSPGLQGFPGITPPSNISGLPGDVGAPGIFGLEGYRGPPGPP
GPVALPGIKGDEGSPGAPGNPGTKGWVGDSGPQGRPGVFGLLGEKGPRGEQGFMGNTGAA
GSVGDRGPKGPKGDRGLPGAPGAVGAPGIAGIPQRIAIQRGPVGPQGRRGPPGPQGEMGP
QGRPGEPGFRGTPGKAGPQGRGGVSAVPGFRGDQGPVGLQGPVGYEGEPGRPGSPGLPGM
PGRSVSIGHLLVKHSQTEQDPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLAPF
STMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIA
VHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGA
RGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKNL
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atggagggccttaagaagttcgatgtgccctgtggagggagagactgcagtgcaggctgc
cagtgctatcccgagaaaggaggatggggccagccagggccagtgggcccacagggatac
accgggccccccgggttacaagggttcccaggactgcaaggccgcaaaggtgacaagggt
gaaaggggggctcccgggatcacaggaccgaagggagacgtgggagccagaggcgtttct
ggatttcctggtgccgacggaattcccggacatcctggccagggcggacccagaggacca
cctggctacgacggctgcaacgggacagtgggtgacgcaggctacccgggacccagcggc
cctggcggcttcctcggcccccgtgggccccaaggacccaaagggcagaaaggcgagccc
tacgctctgtctagtgaggaccgcgacaaatacaggggggaagctggagtgcccggactg
gtcggtttccaggggcctcccggtcgacctgggcccgtgggacagatgggtccggttgga
gctccaggaagagcaggaccccctggaccccctggaccaaaaggacagccaggcaaccga
ggacttggtttttacggagaaaaaggagaaaagggcgacatgggacagcagggacccggt
gggattccaccagacaacagttacgtcgagaggcccaaaaatgacgtgatcctcccagag
cagtataagggtgaaaaaggaagtgagggggaaccaggaagaaaaggcatttccataaag
ggagaagacggcatcatgggcttctcaggagtgcggggtgcccctggcttcgatggtgag
aaaggttcaccgggacagaaaggaagcagaggaccggatggttaccaaggccctgatgga
tacccaggacccaagggagaaatgggtgaaccaggcacccccggcccaccagcctactcc
ccgcatccttccctggccaaaggtgccagaggggacccaggattccatggagcccccggg
gacccaggagcccggggggagtctggagacctcggcttgccaggcctgcctggcacgtcc
atcggagatgcagatgagaagagaggcttaccgggcgagatgggacccaaaggcttcaca
ggggagcagggcatccccgccctgtaccccggcccgccgggagctgacggaaagccaggg
ctccaaggtcccccagggttcccgggaccacctggcccagacggtttccttttcggcctt
aaaggagcagagggcagggtgggctaccctgggccttctggtttccccggggctcgtgga
cagaaaggatggaaaggcgatgccggcgactgtcaatgtgcagagggtgaccagttcatc
gggggtcttccggggccaccaggacccaagggctttcccggcaccaatggggaaccaggg
aggaaaggcagcccgggagaccccggccagcacggcatccccgggttcccaggattcaag
ggagcccctggtggtgttggccctcccgggcccaaaggaatgaagggagattctcgaacc
gtcaccaccaaaggtgagcggggccagccaggtgtcccaggtgtgcctggactgaaaggg
gacagcggcatcccagggcgtgatgggctggatggattcccaggcctcccaggctctccc
ggtgatggcatcaaaggcccctctggggacgcaggccacccaggaccccccggtactaag
ggcattccaggagaaaggggccccccaggattggggctgccaggccccaaaggcgagcgt
ggcttccccggcgatgctggattacctggacctccaggcttccccgggcctcccggcgcc
cccggcactccaggacaaatagattgtgatacgggtgtgaaaaggcccatcggagcagat
ggacaggagaccgtccagccaggttgcgttggagggcctaagggatcgccgggccagccg
ggcccccccggccccccaggtgccaaaggcctcagagggcttccgggattatcgggaact
gatggagcaccagggctcaagggtctcccaggagatccaggtccagagggattcccagga
cccccaggcttcgtggggccccgaggagtcaaaggtgcagtaggccgccctggcctggat
ggactcccgggtccctccggcctgccggggccagtcgggcctccgggagacaggggcctc
cctggagaagtcttgggggcccagcccgggccccggggagacacaggactgcctggacgc
tctgggctgaagggcccccccggagagagaggccctcctggattccggggaagccagggt
caacagggcttcccaggaccttcgggccagccgggactgcccgggccaccaggacagcac
ggataccctggagctcctggccgggaagggcccttggggccgccgggcaccccaggtttt
ggaggtctgcctggagacagaggggagccaggtgacataggcgtccctggccccgtgggc
atgaagggcgtctccggggatagaggtgaccctggctggcagggtgagagaggtcatccc
ggaagccctggattcaaaggagtggccgggatgcctggtgccccgggccccaaaggagtt
aagggttctcccgggatggacggcttccaaggcatgctcgggctcaaggggagatccggg
cttccaggaaacaaaggagagactggattttttggagtccccgggctgaagggcctggct
ggcgagcccggtgtgaaaggcagccgaggggaccccggcccccctggaccacctcccatc
atcctgccaggaatgaaggacatcaaaggagagaaaggagatgaaggccccatgggactg
aaaggatacctgggcttgaaaggccttcccggaatgccagggatccccgggctgtcggga
gtccctgggctgccggggaaaccaggctacgtcaaaggagtcaaaggagataccggattc
cccggcgtgcccgggtcaccgggattccccggcgtgcccggctcccccggaatctcaggg
tttccgggcttcacaggcagtaggggcgacaagggagctccggggacagtaggccttcac
ggcgagatcggccccatcggtgactttggtgatattggaaacactatagaccttccagga
agtccaggcctgaagggggaaggaggcaccgctggagcaccaggtctaaagggattcttc
ggagagaaaggatcagagggtgacgtcggcttccctgggatcactggcctggcaggagtc
cagggccctcctggacttaaagggcaaacaggctttccaggactgacagggctgcagggg
cctcagggagagccgggacgggcgggagtgcccggcaccaaaggagactacggctggccg
gggagcccaggcctaccaggtctgcccggcctccgcggcatcggcggattacacggcttg
ccaggcaccaaaggcttcccaggatccccaggtgcggacatccacggggacgctggctta
ccaggtcctgccggggccaggggtgacccaggagaagccaacacccttccaggccctgca
ggagccccaggacagaaaggggagcgtggagtcccaggggaacgaggcccggttgggagc
ccaggacttcaggggtttccaggcatcacccccccttccaacatctctgggttaccaggt
gacgtaggtgcgcctgggatatttggcctggaaggttatcgaggtcccccggggccacct
gggcccgtggctcttcctggaatcaaaggagatgaggggagtccaggagcccccggaaac
ccagggaccaaaggatgggtcggggactccgggccccagggccggcctggcgtgttcggg
ctcctgggagaaaaagggcccagaggggagcaaggattcatgggcaacacaggtgccgcc
gggagtgtgggagaccgaggccccaagggacccaaaggagatcgaggactcccaggtgcc
ccgggtgctgtgggcgccccggggattgcaggaatcccccagaggattgccatccagcgg
gggccggtgggtccgcagggaaggagaggccctccggggcctcagggggagatgggaccc
cagggccgcccaggagaaccaggtttccgcgggactccagggaaggcagggccccaggga
agaggcggcgtgtcagctgttcccgggttccgaggagaccaggggcccgtggggctgcag
gggcccgttggctatgaaggggagccaggccgccccgggagccccggcctgcctggcatg
cccggccgcagcgtcagcatcgggcacctcctggtgaagcacagccagacggagcaggac
cccatgtgccccgtgggcatgaacaagctctggagcggatacagcctgctgtactttgag
ggccaggagaaggcccacaaccaggatctggggctggcgggctcctgcctggccccgttc
agcaccatgcccttcctgtactgcaaccctggcgatatctgctactacgccagccggaac
gacaagtcctactggctctccaccaccgccccactgcccatgatgcctgtggccgaggag
gacatcaggccctacatcagccgctgctccgtgtgcgaggccccggccgttgccattgcc
gtccacagccaggacgtctccatcccccactgcccggctggatggcggagcttgtggatc
ggatattccttcctcatgcacacagctgcgggcgacgaagggggcggccagtcgctggtg
tcaccgggcagctgcctggaggacttccgagccacgccattcatcgagtgcaacggcgcc
cgaggcacctgccactactatgccaacaagtacagcttctggctcaccaccatccccgag
cagagcttccagggcacaccctcggccgacacgctcaaggccggcctcattcgcacacac
atcagccgctgccaggtgtgcatgaagaacctgtga
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