Lipotes vexillifer (Yangtze River dolphin): 103090416
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Entry
103090416 CDS
T03090
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve04140
Autophagy - animal
lve04148
Efferocytosis
lve05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
103090416 (VPS39)
04148 Efferocytosis
103090416 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
103090416 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lve04131
]
103090416 (VPS39)
Membrane trafficking [BR:
lve04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
103090416 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Beta-prop_RIG_2nd
WD40_like
Lgl_C
Motif
Other DBs
NCBI-GeneID:
103090416
NCBI-ProteinID:
XP_007460205
UniProt:
A0A340XMG7
LinkDB
All DBs
Position
Unknown
AA seq
875 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENAICVGFKRDYYLIRVD
GKGSNKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLVENFKGLAIPYLEHVIHVW
EETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKAPVPAGEEEGELGEYRRKLLKFLEIS
SYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHKHYDQNK
DGNKDVYLSLLRMYLSPPSVHCLGPIKLELLEPQANLQAALQVLELHHGKLDTTKAINLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVXEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcctttgaaccggtgccgatcctagaaaagctgcctctgcagatcgactgt
ctggctgcctgggaggaatggctgcttgttggaacgaaacaaggtcatcttcttctctat
aggattcggaaggatgttggttgcaacaggtttgaagtgacattagagaaatccaataag
aacttctccaaaaagattcagcagatccatgtggtttcccagtttaagattctggtcagc
ttgttagaaaataatatttatgtccatgacctattgacatttcaacaaatcactacagtt
tccaaggcaaagggagcatcactgttcacatgtgacctccagcacacagagactggggag
gaggtgttgcggatgtgtgtggctgtgaaaaagaagctgcagctctatttctggaaagac
agggaatttcatgaattacagggagactttagtgtaccagatgtgcccaagtccatggca
tggtgtgaaaatgctatctgtgtgggtttcaagagagactactacctaataagggtagat
ggaaaggggtccaacaaagagctatttccaacaggaaaacagctggagcccttagttgca
cctctggcagatggaaaggtggctgtgggtcaggatgatctcaccgtggtgctcaatgag
gaggggatctgcacacagaagtgtgccctgaactggacagacatcccagtggccatggag
caccagcctccctacatcattgccgtgttgcctcgatatgtggagatccggacatttgag
ccaaggcttctggtccagagcattgaattgcaaaggcctcgtttcattacctcaggagga
tcaaacattatctatgtggccagcaaccattttgtttggagactcattccagtccccatg
gcaacccaaatccaacagcttctccaggacaagcagtttgaattggctctgcagcttgca
gaaatgaaagatgattctgacagtgaaaaacagcaacagatccatcacatcaagaacttg
tatgccttcaacctcttctgccagaagcgttttgatgagtccatgcaggtctttgctaaa
cttggcacagatcctacacatgtgatgggcctgtaccctgacctgctacccacagactac
aggaagcagctacagtatcctaacccgctgcctgtgctctctggggctgagttggagaag
gctcacttagctctgattgactacctgacacagaaacgaagccaattggtcaagaagctg
aatgactctgatcaccagtctagcacctccccgctcatggagggcactcctaccatcaaa
tccaagaagaagctgctgcaaatcattgacaccaccctgctcaagtgctacctccatacg
aacgtggccctggtggcccccttgctgcgcctggagaacaaccactgccacatcgaagag
agcgagcacgtgctgaagaaggctcacaagtacagcgaactgatcatcctgtacgagaag
aaggggctccatgagaaagctctgcaggtgctggtggaccagtccaagaaagcgaattcc
cctctgaaaggccatgagaggacagtgcaatacctgcaacatctgggcacagaaaacctg
catttgattttctcctactcagtgtgggtgctgagagactttccagaggatgggctgaag
atatttactgaggacctcccagaggtggagtctctgccgcgagaccgagtgcttggcttc
ttagtggagaattttaagggtctggcaattccatatctggaacacgtcatccacgtttgg
gaggagacgggctctcggttccacaactgcctgatccagctgtactgtgagaaggtgcaa
ggtctgatgaaggagtatctcctgtccttccctgcaggcaaagctccagtccccgctggc
gaggaagaaggagagctgggagaataccgacggaagctccttaagttcttggaaatttct
agctactatgacccaggccggctcatctgtgattttccttttgatggcctcttagaagag
cgtgctctcctgctgggacgcatggggaaacacgaacaagctctcttcatctatgtccac
atcctgaaggatacgagaatggctgaagagtactgccacaagcattatgaccaaaataaa
gatggcaacaaagatgtgtatctgtccctgctccggatgtacctgtccccacccagcgtt
cactgcctggggccaatcaagctggaactgctggagccacaagccaacctccaagccgcc
ctgcaggtcctcgagctgcaccacggcaaactggataccaccaaggccatcaaccttctg
ccagcgaacactcagattaacgatatacgcatctttctggaaaaggtcttggaagagaat
gcacaaaagaaacggttcaatcaagtgctcaagaaccttctccatgcagagttcctgagg
gtnnnngaagagcggattttacaccagcaggtgaagtgcatcatcacagaggagaaggtg
tgcatggtgtgtaagaagaagattgggaacagtgcatttgcaagataccccaatggggtg
gttgtgcactatttctgctccaaagaggtcaacccagctgacacctga
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