Lipotes vexillifer (Yangtze River dolphin): 103090652
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Entry
103090652 CDS
T03090
Symbol
SETX
Name
(RefSeq) probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
103090652 (SETX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lve03021
]
103090652 (SETX)
Enzymes [BR:
lve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103090652 (SETX)
5.6.2.5 RNA 5'-3' helicase
103090652 (SETX)
Transcription machinery [BR:
lve03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103090652 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
UvrD-helicase
AAA_30
AAA_22
ResIII
SLFN-g3_helicase
nSTAND3
Helicase_RecD
AAA_16
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
103090652
NCBI-ProteinID:
XP_007453174
UniProt:
A0A340X1J8
LinkDB
All DBs
Position
Unknown
AA seq
2691 aa
AA seq
DB search
MSTCCWCTPGGISTIDFLQHYASETHSSEFRTADEDLCYCLECVAEYHKARDELPCLHKV
LWELETSRLINHFEKAMKAEIGDDDELYIVDNNGEAQPFDFTGQDFENKLRVPLLEILKY
PYLLLHERVNELCVEALCRMEQANCSFQVFDKHPGIYLFLVHPNEMVRRWAILTARNLGK
VDRDDYYDLEEVLTCLFKVIELGLLESPDIYTSSVLEKGKLILLPSHMYDAANYKNYWLG
ICMLLTILEEQAMDSLLLGSNKQNDFMQSILHTMEKQSDDDSVDPFWPALHCFMVILDRL
GSKVWGQLIDPIEAFQTIINNVSYNKEIQNIRNSSVRTRFEPESYLDDMVTCSQIVYNYN
PEKTKKDSGWRSAICPDYCPNMYEEMETLTNVLQSDIGQDMRVHNSTFLWFIPFVQSLMD
LKDLGVAYIVEVIHHLHSEVKDVLNQTDAVCDTVTEFFLLILVSVIELHRNKKCLHLLWV
SSQQWVEAVVKCAKLPTTAFARSSEKSSGNCSKGTTMISSLSLHSVPSNSVQLACVQLIR
SLLKEGYQLGQQSLCKRFWDKLNLFLRGNLSLGWQLTSQETHELQTCLKQIIRNIKFKVP
QCSTSVALTSPCKTPPAFYNKEESEQTGKKSKKDRHCLENSSPTFSKEPMKADACEVQES
IFSKANNAIEEDNEQTYIKDLKLRDHLSAELCLKPSSKRLVNERARGQVKISTGKHKSVK
ENSSYTPQNCTSRNGPEKVFDRGIITSTRLLTDSSNDSLEKVSTSNEDFSLKGDALGKTS
KAKTKAHKDEICAKLSHVIKKQRRKSTTLEENLTVSSTESFHSKKDTGGQKGDGFIHNLS
LGPNGILDDKHGEQKSENSLLLKKKQVNKEHEVGIFSTPELSCQILECHVGNKDLVSFTE
MTNIFVEKAPPFKDPVTGLESRDMEIIKSTAQFSSDLREQVLSISPKFDTLTDSQIDRDL
HKLSLVAQASVIKFPSDSTQKSLSQLQRKVKDDRRCFTANQNSVRETCCGQVIIISDSDE
EDDDDDERIVGFKKHIKQDKTCIEKECPEQHTSIANTNVEQKVIKEENTRSLLQFEESDS
QFFEFESPCEVFSVWQDQKPDNKNSVQENEENSCLTHVGDITNDWGHGTDYVSEEVIKKA
AEGIEEHAEPRSSSISVEKFCEIEVKKPKRKRYEKAAMAEDPLRPSSPVKSEDQSDILNE
RDVTENDFKSIDIRTTTPSSSVQRTTTVSLKKSPPKLRTYSKRVRRVSLSKTPKKTHSDT
KTGQSKSSNYISCRTTPAIVPPKKFRQCPEPTSTVEKLGLKKAPRRAFELSQRSLECLAQ
LRDHGKTVGAVDTRKKTKLISPQTLSVRNNKKLLTSQDLQMRRQMRPKAQHNRQRCFDYQ
STDTTRAGPHGAQNSDKFVPESDTSDYSYKGGVEVTAKSKEKQLIKCVSSETEPMKAKYA
AQVADDTCLLNQCTSVVLNGEIPTNEIVVSTSGDPLGGGDLTVHHLDVAALKEGEPESCN
DVEEDNIFLTQRDPEDMDLCSQMEKENDKLIEVVHGKGTVQAEEDSVSRPQLESLSSTKC
KYKDCVETLKNQGEYCSKHSEAKAADEDIFRKPGLPPSASKPSRPPTAKIFSSSSTSRIA
GLSKSLENTAALVPTLKNKSSGVQSVPKVPQPVSPVSKKPVAEVKGLCNVLHSHTPNNSN
RQGYKVPFCENRSFSASPPVNVLLSAQSISDTFVKEVLKWKYEMFVNFDQCGPPSTLCQS
IARPVPVRFQDGGDYFDVFFPLMILNTFETVAQEWTSSPNKEKFHQLHLRKFPSEYKKYW
EFVVYLEECELAKQLHPKENDLVFLVPERLNGEKEDIERNHMQDPHEYYCGYVHKFRRTS
VMRNGKSECSVSIQTQHNLPVNLNEFVKCLVISSLVTTQRKLKAMSLLSGRNQLARAVLN
PNPMDFCTKDLLTTASEKIIAHLKDFNEDQKKAIETAYAMVKHSPAVAKICLIHGPPGTG
KSKTIVGLLYRLLTENQRRGRSDENSNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKC
KDKKNPLGNCGDINLLRLGPEKSINAEVLKFSLDSQVNRRMKKDLPSHVQEMHRRKEFLD
HQLDELSRQRALCRGGRELQRQELDEKIARVSKERQELASKVKEVQGRPQKTQNIIILES
HIICCTLSTSGGLLLEAAFRGQGGVPFSCVIVDEAGQSCEVETLTPLIHRCNKLILVGDP
KQLPPTVISVKAQEYGYDQSMMARFYKLLEENVEHNVIGRLPILQLTVQYRMHPDICLFP
ANYVYNRNLKTNRMTETIRCSSDWPFQPYLVFDVGDGSEKRDNDSYVNVQEIKLVMEIIK
LMKDRRRDFTYRNVGIITHYKAQKMMIQKDLDKEFDRKGPAEVDTVDAFQGRQKDCVIVT
CVRANAMQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENHHWNQLIQDAQKRGAII
KTWDKNYRQDAVKILKLKPVLQRSLTHPPAIAPEVSRPQGGVPSNKLDSEFAKMSIASSL
YPSPSDSKEATVTVTANDPERPPIQDWLRDPRLLRRMGLGCEAKGKCLSELQPSSPQYPG
ATPPSGEPGSPGSHQDPTSIGQQPPAKGAAVNNHRPHAPCDPPAVSTDASTSKRKCAQEG
EAVSHSRETRAFPEGDQERCGSLSHHTKRNSGWDERGLEEEDSSSKKRKLL
NT seq
8076 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgtgttgttggtgtacaccaggtggtatttccaccattgacttcctgcaacac
tatgcatctgagacccactccagtgaatttcgaacagctgatgaagacctctgctactgc
ttagagtgtgtggctgaataccacaaagcaagggatgaattgccatgcttacataaggtt
ttatgggaattagaaacctcacgtctcataaatcactttgaaaaggccatgaaggcagaa
attggagacgatgacgagttatatatagtagacaacaatggagaggcacagccgtttgac
tttactggccaagactttgaaaataagcttcgagttcctcttcttgaaatactgaaatat
ccttatttgcttttacatgagcgtgttaatgaattatgcgttgaagcactttgccggatg
gaacaagctaactgctcctttcaggtttttgacaaacatccagggatctatttgtttttg
gtccatcccaatgaaatggttcggcgttgggctatcctgaccgcaagaaacttgggaaaa
gtggacagagatgattattatgacttagaggaggttttgacttgcctttttaaagtcatt
gagttggggcttttagaaagtccagacatttatacttcttctgtccttgagaagggtaaa
ctgattcttctgccttcacacatgtatgatgctgccaactacaaaaactattggctaggt
atttgcatgttgctgaccattcttgaggagcaagccatggattcactgttgttgggctca
aacaaacagaatgattttatgcagtcaatacttcacaccatggagaagcaatcagatgat
gatagcgtggatcctttctggccagcgttacactgtttcatggtgattctggatcgcctt
ggatctaaggtctggggtcaacttattgatcctattgaggcatttcaaaccattatcaac
aacgtgagctacaataaagagattcagaatatacggaacagctctgtgaggacgaggttc
gaaccggagtcatatttggatgatatggtgacttgcagccagattgtatacaattataac
cctgaaaagaccaaaaaggattcagggtggagatcagccatttgcccagattattgtcct
aacatgtatgaagaaatggaaacattaactaatgtgcttcagtcagatatcggtcaagac
atgcgtgttcataacagcacgtttctgtggttcatcccttttgtgcagtccctcatggat
cttaaggatctgggtgtggcttatatagtggaggttattcatcatctgcattctgaagtc
aaagacgtcctcaaccagacagacgccgtgtgtgacacagtcactgagtttttccttctc
attttggtgtcagtgattgaactgcatagaaataaaaagtgtttgcatttgctgtgggtt
agttcccagcagtgggtggaagccgtcgtaaaatgtgccaagcttcccaccaccgcgttt
gcacggagttctgagaagtcatctggaaactgctccaaaggcacaacaatgatatcatct
ctgtcattgcattcagtgccatctaactctgtacaacttgcttgtgtgcagctgatcaga
agtctccttaaagaaggctatcagcttgggcagcagagtctttgtaagcgattctgggat
aagctcaacttattcctgcgaggaaatctatctttaggttggcagttgactagtcaggaa
acccatgagttacaaacttgtttaaagcaaattattagaaacataaaattcaaagtacct
caatgtagcacttctgtggctctgacttctccatgtaaaacgcctcctgcattttataat
aaagaagaaagtgaacaaacagggaagaagtctaaaaaagacaggcactgtctggaaaac
tccagcccaacattctctaaagaaccgatgaaagctgatgcatgtgaagtgcaagagagt
attttcagcaaagcaaataatgccatagaagaggataatgagcaaacttatataaaagat
ttgaaactcagagaccatctctcagctgagttgtgcttgaagccgagtagtaaaaggctt
gttaatgaaagagctcgaggccaagttaaaataagtacagggaagcataagtctgtaaaa
gagaattcctcatatacccctcagaattgtacttcaagaaatggtccagaaaaggtattt
gacagaggaataataacatcaacacgtttgttgactgattctagcaatgactctctggaa
aaggtgtccacatcaaatgaggatttctctttaaagggtgatgctcttggcaaaacctca
aaagcaaaaactaaggcacataaagatgaaatctgtgctaagttatcacatgtaataaaa
aagcaacgcaggaaaagtaccactttagaggaaaacctgactgtatctagcactgaaagt
ttccattcaaagaaagatacaggaggtcagaaaggagatggcttcatacacaatctctct
ttaggccctaatggtattctggatgataaacatggagaacaaaaatctgaaaacagttta
ttgctgaaaaagaaacaagtaaacaaggaacacgaggtaggcattttctctacccctgaa
ctcagttgtcaaatactagaatgtcatgttggtaataaagatttggtctcatttacagaa
atgaccaatatttttgtggagaaagcacctccctttaaagatcctgtgactggacttgaa
tcaagagatatggaaattatcaagagtactgctcagttttcttctgatttaagagaacag
gtccttagcatcagtcctaagtttgacaccttaacagattctcagatcgacagagacctc
cacaaattatctttagtagctcaagccagtgttattaagttcccatcagattcaactcaa
aaaagtttatcccagctacaaagaaaagttaaagatgatagaagatgtttcacagccaac
cagaatagtgttagggaaacctgctgtggacaggtcattattatttcagattctgatgaa
gaagatgatgatgatgatgaaagaattgtgggttttaagaaacacattaaacaggataaa
acatgcattgagaaagaatgtccagagcagcatacttcaatagctaacacaaatgtggaa
cagaaggtaataaaggaagaaaatacaaggtcccttttgcagtttgaggaatctgattct
cagttttttgagtttgaaagtccatgtgaagtgttttcagtttggcaagatcagaaacca
gacaacaagaattcagttcaagagaatgaagaaaattcatgcttgactcatgtaggtgat
atcacaaatgattggggtcatggtacagattatgtatctgaggaggtcattaaaaaagca
gcagagggcattgaggaacacgcagaaccacgcagtagtagtatttctgttgagaaattt
tgtgagattgaagtaaaaaaacccaagagaaaacgatatgagaaagctgctatggctgaa
gatcctctgaggccttcatctcctgtcaaaagtgaggaccagtctgatattcttaatgag
agagatgtgactgaaaatgattttaaaagtatagacataaggactacaactcccagttca
agcgttcagagaaccactacggtttccctgaagaaatctccaccaaagcttcgcacttat
tccaaacgtgttaggagagtctcactttctaaaactcctaaaaaaacacattcggatacc
aaaacagggcagagtaaaagttcaaattacataagttgtagaacaactcctgctatagtg
ccaccaaagaaatttcgccagtgtcctgaaccaacttcaacggttgagaaacttggtctg
aaaaaggctcctcgtagggcatttgagttgtcccagcgatctttggagtgtttagctcag
ttacgtgaccatggcaaaactgttggagcagttgatacccggaaaaagactaaattaatt
tctcctcagactctctctgtcagaaataataagaaactgctgacaagtcaagaccttcag
atgcgaaggcagatgagacccaaagcacagcataacagacaaagatgttttgattatcaa
agtacagatacaacacgagcaggcccacatggagcacagaattctgacaaatttgtgcca
gaatcagatacatcagattatagttataaaggaggagttgaggtaactgctaaaagtaag
gaaaaacagttaataaaatgtgtgtcttctgaaacagaacccatgaaagcaaaatatgct
gctcaggtagctgatgacacctgtcttttgaaccagtgtacttctgtagtattaaatgga
gaaataccaacaaatgaaatagttgtttctacatcaggggaccctttaggtggaggtgac
ctaacagtacatcatttagatgtggcagctttgaaagagggagagcctgaatcctgcaat
gacgtagaggaagataatatatttttaacacaacgtgatcctgaagatatggatttatgt
tcacaaatggagaaagagaatgataaactcattgaagtcgttcatggaaaaggtacagtc
caggcagaagaagattctgtgagtcggcctcagttggaatctttgagtagcacaaaatgt
aagtacaaagattgtgttgaaacactgaaaaaccagggtgaatactgttcaaaacactct
gaagctaaagcagcagatgaagatatatttcgtaaacctggcttgcctccctctgcatct
aaaccttcgagacctcccactgctaagattttcagctccagtagcacttcacgaattgct
ggcctttccaagtctttggaaaatacggcagcgctcgtaccaactctgaaaaataagtca
agtggggtacagtctgttccgaaagtaccacagccagtctctccagtgtccaagaagccg
gtggctgaagtgaagggtttgtgcaacgttctgcattctcatactccaaataattccaac
aggcaaggctacaaagttccattttgtgaaaacagatctttttcggcttcccctccagta
aatgttctcttgtcagcacagtccatctctgataccttcgttaaagaggtcttaaaatgg
aaatacgagatgtttgtgaactttgatcagtgtggacccccgtcaactctttgtcagtcc
atcgcaagacctgtgcctgtgagatttcaagatggtggagattattttgatgtgtttttc
cctttgatgatactgaatacttttgaaacagtggcacaggaatggaccagctctccaaac
aaagagaaattccatcagttgcatttacgaaaatttccttctgagtataaaaaatactgg
gagtttgtggtttatcttgaggaatgtgaactagctaaacagcttcatccaaaggaaaat
gatttggtgtttttggttcctgaaagactaaatggagagaaggaggacatagagagaaat
cacatgcaagatccccatgaatattactgtggttatgttcataaattccgccgcacttca
gtcatgcgtaatgggaaatctgagtgttccgtttccatccagactcaacataatttacca
gtcaatttaaatgaattcgtgaaatgtcttgtaatcagctctctggtgactacacaaagg
aagttgaaagccatgtctttgctgagtggtcggaaccaactggccagagccgttctgaat
ccaaaccccatggacttctgtacaaaagatttactaactacagcatctgagaaaattatt
gcccacctaaaagatttcaatgaagaccaaaagaaagcaatagaaactgcatatgccatg
gtgaaacactccccagcagttgccaagatctgtctgattcatggaccacccgggacagga
aaatcaaaaaccattgtgggcctcctgtaccgcctactgacagagaaccagaggagggga
cgttcagatgagaactccaatgccaaaatcaaacaaaaccgtgtccttgtgtgtgcgcct
tccaatgcagctgttgatgaacttatgaaaaaaattatccttgaattcaaagagaagtgt
aaagacaagaagaatcctttgggaaactgtggagatataaatttactccgtctaggtcca
gaaaagtctattaatgctgaggtcctaaaattcagtttggacagccaagttaaccgcaga
atgaaaaaagacttaccttctcatgttcaggagatgcatagaagaaaggaatttctagat
catcaactagatgaactttcccgccagcgtgctttatgccgaggtggaagggaactacag
aggcaagaattagatgaaaaaattgccagagtttcaaaagaaaggcaggagcttgcttct
aaagttaaagaggttcaaggacgcccacaaaagacacagaacatcatcatcttagagtcc
cacatcatctgctgcacactgagcacgagtggtggtttgctgcttgaggctgctttccgt
gggcaagggggtgtcccctttagttgtgtcattgttgatgaggccggacagtcttgtgaa
gttgaaactcttactccgctcatccatcgttgcaacaagctcatcctcgtaggagatcct
aagcagctccctcccacggtcatttctgtgaaggcccaggagtatggctatgaccagtcg
atgatggcccgcttctacaaacttctggaagagaacgtggagcacaacgtgattggcagg
ctgcctatcttacagctcaccgttcagtacaggatgcacccagacatatgtctcttccct
gctaattacgtttataacaggaacttgaaaacaaatagaatgacagagaccattcggtgt
tcatctgactggccatttcaaccctacctcgtgtttgatgttggagatggttcagaaaag
cgggataatgattcatatgtaaatgttcaagaaataaaactggtaatggaaataattaaa
cttatgaaagacagaagaagggattttacttaccgaaacgttggcataataacccattac
aaggctcagaagatgatgattcagaaggatttggacaaagagtttgatagaaaagggcca
gcagaagtagataccgtggatgccttccagggtcgtcagaaagattgtgttattgttaca
tgtgtcagagcaaatgccatgcaaggttcaattgggtttctggcaagtttgcagagattg
aatgtcaccatcacacgagccaagtacagcctcttcatcctgggacatttgaggaccctg
atggaaaaccatcattggaatcagctgattcaggatgcgcagaagcgtggtgccattatt
aagacttgggacaaaaactatagacaagatgcagtgaagattctgaaactcaagcctgta
ctgcagagaagtctgactcaccctcctgctatcgccccagaagtgtccagaccccagggc
ggagtgcccagcaacaagctagacagtgaatttgccaagatgtctattgcttcttccctg
tacccctcaccctctgactccaaagaagccactgtcactgttactgcaaatgaccctgaa
aggccacccattcaggactggcttcgggacccacgactgcttaggaggatgggcttgggc
tgtgaagccaaagggaaatgcctcagtgagctgcagccctccagcccccagtatcccgga
gcaacgcctccctctggagagccaggctcccctggaagtcaccaggatccaaccagtatc
gggcagcagccccccgccaagggagctgctgtgaacaaccacagacctcacgcgccgtgc
gaccctccagctgttagtaccgatgcttccacgagtaagagaaaatgtgcccaggaaggg
gaggcagtcagccacagtagggagaccagggccttccctgagggggatcaggagaggtgt
ggctctctgagccaccacacaaagaggaactcaggctgggacgagagggggctggaggag
gaggacagtagctcgaagaagaggaagcttttatag
DBGET
integrated database retrieval system
