Lytechinus variegatus (green sea urchin): 121405729
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Entry
121405729 CDS
T11173
Name
(RefSeq) cleavage stimulation factor subunit 3-like isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121405729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121405729
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
121405729
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
121405729
NCBI-ProteinID:
XP_041452604
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Position
19:complement(16821421..16848282)
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AA seq
720 aa
AA seq
DB search
MSGDIRSELFTGWGYVPEKVKKAQRKIQVYPFDTDAWNILLREAQNQPVEKARTLYELVV
TTFANSGRYWKNYVEQEMRGKNYERVEKLFQRCLMKVLNIDLWKCYLAYVKETKGSLSSY
REKMAQAYDFALDKMGMDIFSFPIWNDYINFLKGVEAVGSYAENQRITAVRRVFQRGIVN
PMSNIEALWKDYNNYENGINVMIAKKMIEDRSRDYMNARRVAKEYEAITKGLNRNNPSVP
PTGTAEEARQIELWKKYVNWEKQNPLRTEDQMLITKRVMFAFEQCLLCLGHHPDVWYEFA
LYLESASRIFTEKGDMNSGKVYSDEAAAVYERAISTFMKKNYLIYFAYADFEEGRMKYEK
VHNIYSRMLAQEDVDPTLVYVQYMKFARRAEGIKAARTVFKKAREDPRSKYHVFVAAALM
EYYCSKDSQVAFKIFELGLKKYGNVPEYILAYVDYLSHLNEDNNTRVLFERVLTSGSLPQ
EQSGEIWLRFEDFESTSGDLASIIKVEKRRQTIFKTDYKDRETSLLVDRYRYLDLFPCNP
AELKALGYKDLKQSNKVFAISVNPVSSEQSQGTEEGGEAARESKQEEIFRPSLDQMLPFR
PRVAPLPGAHPVPGGDFPLPLAASMVMTKLPPPQSFQGPFVKVDDLIRLIAECRLPEPSH
EPVPLPNGMEQEDSQGDGELKRKRGVVAGKPVEEDSDDEESSQHAPRHDIYRSRQQKRVK
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggggatataagatcggagctgtttacgggctggggttatgtgcctgaaaaagtg
aagaaagcccagcggaaaatccaagtttatccgttcgacaccgacgcgtggaatattctt
ttacgagaagcccagaaccaaccagtagagaaagccaggaccctgtatgagctcgtggtt
acgacgtttgccaactccggacgctactggaagaactatgtggaacaagagatgagagga
aaaaactacgaaagagttgaaaagctgtttcaacgatgcttgatgaaagttctgaacatt
gatctgtggaagtgctacctggcctacgtcaaggagactaaggggagtctatcatcgtac
agagagaagatggcacaggcctacgactttgccttggataagatgggaatggatatcttt
tcttttccaatctggaatgactatatcaactttttgaagggagttgaagctgtaggttcc
tatgcagagaaccagaggattactgctgtacgacgtgtattccaacgaggtatagtcaac
cccatgtcaaatattgaggctctgtggaaagactacaacaattatgaaaacggcatcaat
gtgatgatagcaaaaaagatgattgaagatagaagccgagattacatgaatgccaggaga
gttgccaaggagtatgaagctatcacaaagggtctcaatcggaacaacccatccgttcct
ccaaccggcacagctgaagaggcaaggcaaatagaactctggaagaaatatgtaaactgg
gagaaacagaatccactcaggacagaggatcagatgctcattacaaagagagtaatgttt
gcctttgagcaatgtctcctgtgtcttggtcatcatcctgatgtttggtatgagtttgct
ctctacttggaaagcgctagtaggatattcacagagaaaggggatatgaacagtgggaag
gtgtacagtgatgaagcagctgcagtctatgaaagagccatctcaacatttatgaagaaa
aactacctgatatactttgcttacgctgactttgaagagggtaggatgaagtatgagaag
gttcataatatctactcaaggatgttagctcaggaagatgtggacccaactctggtatat
gtgcagtatatgaagtttgccagaagagcggagggcatcaaggcagctaggacagtgttc
aagaaagctagagaggatccaaggagcaagtatcatgtctttgtggctgccgctctcatg
gaatactactgtagcaaggattcacaagtagcttttaagatctttgagttgggtctaaag
aagtatggcaatgttcctgagtacattctagcctatgtagactacctttcacatctcaat
gaggataataatacaagggttctgtttgagagagttctcacatcaggaagccttccacaa
gaacagtctggtgagatctggttacgatttgaagattttgagtcgacatcaggagatcta
gcgagtattatcaaggtggagaagaggaggcagaccatcttcaagacggattacaaagat
cgcgagacgagcctcttggttgacagatatagataccttgatcttttcccatgcaaccca
gctgaactcaaagcactgggatacaaggatctcaagcaatcaaacaaggtctttgcgatc
tccgtcaatccagtcagctcagaacagagtcaagggaccgaggagggaggtgaagcggca
agagagagcaaacaagaagagatcttcagaccaagtctggatcagatgcttccgttcaga
cctcgtgttgcaccattacctggtgcccaccctgttcctggaggggatttccctctgccg
ttagctgcttctatggtcatgaccaaactccccccacctcaaagctttcagggacccttc
gtcaaggtcgatgacctcattaggttaatagctgaatgcaggttaccagaaccctctcat
gagcctgtaccactccccaacggcatggagcaggaggatagccagggagacggcgaactg
aaacgcaaacgaggcgtggtcgcgggcaagccggtcgaggaggactccgatgacgaggag
tcttcccagcatgcacctcgacatgatatctaccgaagcaggcagcagaagagagtcaag
tga
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