Lytechinus variegatus (green sea urchin): 121405932
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Entry
121405932 CDS
T11173
Name
(RefSeq) CCR4-NOT transcription complex subunit 2-like
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121405932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121405932
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121405932
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121405932
BRITE hierarchy
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Paralog
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GFIT
Motif
Pfam:
NOT2_3_5_C
TFIIA
Motif
Other DBs
NCBI-GeneID:
121405932
NCBI-ProteinID:
XP_041452859
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Position
19:complement(5466333..5485717)
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AA seq
564 aa
AA seq
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MTIFNLKQDDPDERTTFTMSGQFGMTQEIRKPGATDLTSQVEFSLLGSRTKEKTSKMGPY
KEGGDNDFGDAMFFNPASMFPPHRPGKDQDLMTSQSQSLSQFSGSFYGGQQGLGIQNALP
RGMSSQQQAFPPRSSGMSSHSSLGLPTSSGMPLPSMPPPPNPASPNRGMLNMSHNRTSPS
ILAMQQKHSTAQQQQQQQQQQQQQQQQQQQSRIIGSGVTPTNSSGIGAFNRPPSFGGGQS
ALLGNFGGYGNANDTSILDSSDFPVLAGTRGRQTGESSSGNVSLFQPNPMAGRPAYGMVS
KQAEPTPEFQMQSEDFPALPGANIKNEQKENARFPGDKANNNSSEENGNGNEVKGIQIHP
DGKVMNIPPGMLTDPFGMVGLLTFIRAAETDPNLVQLALGSDLTTLGLNLNSPENLYSTF
QSPSSDAPSRPQDIDYHVPQEYLTNLHIRDKLAPIKLSRYGEDLLFHLYYTHGGDVLQLA
AAAELYNRDWRYHKDERVWITRGPGMEPQVKTSTYERGVYYYFDYNRWCKMAKDFHLDYD
KLEERPHLPASFHHNTSTNPAFQK
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgacaatctttaatctcaaacaagacgacccagatgaaagaacaactttcaccatgtct
ggacaatttggtatgacccaagagattaggaaacccggtgcaacagacctgacttcacaa
gtggaattttcattattagggagtagaacgaaagagaagacgagtaagatgggtccgtac
aaggagggaggtgacaatgattttggtgacgccatgttctttaatccagcatctatgttt
ccccctcacagaccaggaaaagaccaggatttaatgacatcgcaatctcagtccctttcc
cagttctcaggaagtttttacggtggacagcaaggattaggcatccagaatgcgttaccg
agagggatgtcgagtcagcagcaagcgtttcctccccggagttcgggcatgtcgagtcat
tcgagtttaggtctacctacgtcatcgggcatgccgttgccttctatgcctcctcccccc
aaccctgcatcaccgaacagggggatgctcaacatgagtcataacaggacctcacccagt
attctagctatgcagcagaagcattcaacagcgcaacagcaacaacaacagcagcaacaa
cagcaacaacaacagcagcagcaacaacagtcgaggataatcgggagtggagtgacgccc
accaactcaagcggcatcggtgcattcaatcgacccccaagcttcggcggcggacagagc
gcgttactcggcaactttggtggttacgggaatgcaaatgacacctcaatccttgacagc
tccgactttccagtcctggcgggcacgagagggcgacaaacgggagaatcatcgtcgggg
aatgttagcttgttccagccaaatcccatggcaggcaggcctgcttatggcatggtaagc
aaacaagcggaaccgactccggagttccagatgcagagtgaagacttccccgcccttccc
ggagcaaacatcaagaatgaacaaaaagaaaatgcaagattccctggggacaaggcgaat
aacaacagttcagaagaaaacggcaatggcaacgaggttaaaggcatccaaatacatcca
gacggtaaagtaatgaacatcccaccaggtatgttaacagatccctttggtatggtagga
cttctaacgttcatcagagcagccgaaacggatcctaatcttgtccagttagccctcggt
agcgacctcacgacgttgggtctcaatctcaattcaccggaaaacctgtacagtacgttc
cagtcgccgagttccgatgcgccgagcagacctcaagatatcgactaccacgtaccacag
gagtatctcacaaacctacacatacgagataagcttgcgccaatcaagttatcaagatac
ggagaagatcttctgtttcatctgtactacacgcatggtggggatgtcttacagctagca
gccgctgcagaactgtacaaccgagactggagataccataaagatgagagagtttggatc
acccgaggaccaggcatggagccccaggtcaaaacgagtacgtacgagagaggagtctat
tactactttgattacaaccgctggtgtaagatggccaaggacttccacctcgactacgac
aagcttgaagagcgcccccatctgccggcatcctttcaccacaacacctcgacgaatccc
gcattccagaaatag
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