Lytechinus variegatus (green sea urchin): 121406112
Help
Entry
121406112 CDS
T11173
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121406112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121406112
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121406112
mRNA degradation factors
5'-3' decay
Decapping complex
121406112
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
DUF6776
Motif
Other DBs
NCBI-GeneID:
121406112
NCBI-ProteinID:
XP_041453062
LinkDB
All DBs
Position
19:12080404..12139764
Genome browser
AA seq
904 aa
AA seq
DB search
MTDNLFGYGGDLPPLDEGPDEEDEGEFYDNVNDDTFGTGADAGDWVDAHERMADEFQFGG
DQPAGAHGGQHDGMVPFFEEEDLEKSITKLVLEEEETYYDPASRTSSQSKPISIKGGQES
SISQLFGPKSPPSLFDPTDFMSPTRNIWGSPEVHQTVEMPTKPGVAATEERLKAMLHIGQ
APPGRPADDGWEDPAIVRAVSDSQPVKKKVMSLAELEQELMTGRKPTPSKALPARSVSPE
IGSPPVAIPPPIGTPPRGSMMHHARAPHPTMEQQKHSPFPQHIQAPPQATPPPIHQKTPG
VGQSPIVPIHPQHLQQLTRQIHQYIGGRVSPTQISQLIIRLHASGGRISPNSIRTAVFTS
IPPPSVDVPRPKATNVAGSPGFPGTQRLPFNAGSPQMPYSSSPRGMMMGPGMGSSPGANT
PPMHMGSGRGGRFPRAMHGLTPMNPRIPPVHSRPDQGGMNRRYPYSPQQRGPHQNIGKYG
DGPRAQRQIRFQRGGGGDNQYHRRGNRGDYDEYSCLMSQKEKEWVIKIQMLQLTSNNPAV
DDFYYQNFMARKAAKEKDREESGKNNVQGKDGKKEKKLVLRPLESKAYQPAQFEGALGKL
TSASVNNPRQIIDIHIDNAPDEEEGGKAKDHSRRRRTLLAIERLFSLVLEVEDLDLLVRG
LPESDRGPLLEKRKGPMMKLCAMLKGEKGDGLSERTPSSLFHQILGIRKGRKLVSRIIPL
LGKEEAFPVVETLFADLTYVFKQEAKDLKRDAIESQRGRLDETLPQLFPPLCQVIQESSL
IDLTSLVGDLQSQIPTTPTATQPKGSAVIAGAIQNKLGVSIVMCMLNRAEEVYTSTAEES
PPFHTQWMECVHLFAQAICIVSDTAIARPLGKFPLVLDHFSRFVSKQPLNALEKRLRNLI
DHEE
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgacagacaatttatttggttatggcggagatttacctccacttgatgagggaccagat
gaggaggatgaaggagagttctatgacaatgtcaatgatgacacctttggaaccggagct
gatgctggagattgggttgatgctcatgagcgtatggcagatgagttccagtttggtgga
gatcaaccagccggagctcacgggggacagcatgatggtatggtacctttttttgaggag
gaagaccttgagaagagtatcaccaagctagttcttgaagaggaagaaacttactatgat
ccagccagcaggacctcttcccagtccaagcccatctccatcaagggtggtcaggaatct
agcatcagtcagctgttcgggccgaagtccccgccttcgctcttcgaccctacggacttc
atgtcccctacccgcaacatctggggctccccggaggtgcaccagacggtggagatgccc
acgaagccaggggtagctgccacagaggaacggctgaaggctatgctccatatcggccag
gcccctcccggaaggcccgccgacgatggatgggaggaccctgctattgtccgtgcagtc
agtgactcccagcctgtgaagaagaaagtcatgtccctcgccgagcttgaacaggagctc
atgacggggcgcaaaccgacccccagcaaagcgcttcccgcccgctccgtctcgccggag
atcggttcgccgcccgtcgccattccgccgccaatcggcacaccacccaggggatccatg
atgcaccacgcacgggcgccccaccccactatggagcaacagaaacattctccatttcct
caacacattcaggctcctccacaagcaactcccccaccaatacaccaaaagactcctggt
gtggggcagtctcccatcgttcccatccacccccagcacctccagcagctcacccgccag
atccaccagtacatcggagggagggtatcccctactcagatcagccaactcatcatacgc
cttcatgccagcggtgggcgcatctccccaaacagcatccgcacggccgtcttcacctcc
atccctcccccctccgtcgacgtcccgcggccgaaggccaccaacgtcgcagggtcgccg
ggcttcccgggcacccagagattgccgttcaatgcggggtcgccgcagatgccgtattcc
tcgtctccgcgggggatgatgatgggaccagggatggggtcaagtcctggagctaacacc
cctcccatgcacatgggtagcggtagaggggggcggttcccaagagcgatgcatggcctc
acacccatgaacccaaggattccacctgtacactctagacccgaccaaggcggcatgaac
agacgctacccatacagtccacaacagagaggtcctcatcagaacatagggaaatatggt
gacggaccgcgtgcccagcggcagatccgtttccagcgcggcgggggcggggataaccag
taccatcgtcgtggaaaccgaggcgattatgacgagtattcctgtttgatgtcgcagaag
gagaaagaatgggtcatcaagattcagatgcttcaactgacgtcaaacaaccctgctgtg
gatgacttctactaccagaactttatggccagaaaagctgcaaaggagaaggacagagag
gagagtggaaagaacaatgtacaaggaaaggatggaaagaaggagaagaaacttgtattg
cgccctctagagagcaaagcctaccaaccagcccaatttgaaggtgcccttggaaagttg
acttcagcgagtgtgaacaatccccgtcagatcattgatattcacattgataacgcacca
gatgaggaagagggaggaaaagcaaaggaccatagtcgtcgacgtcggacactcctcgcc
atcgagcgcctattcagcctcgtcctcgaggtcgaggatctggatttgcttgtcagaggc
ttacctgaatcagatcgtggacctctcttggagaaaaggaaaggacctatgatgaaactg
tgtgctatgctgaaaggagaaaagggtgatggactcagtgaaaggacgcccagttctctg
ttccatcagatccttggtatccgtaaggggcgtaagctggtgagccggatcatcccactc
ctcggaaaggaggaggcgtttcctgtggttgagactctctttgccgacctcacctatgtc
ttcaaacaggaggctaaggatctgaagagggatgcaatcgaaagtcagagggggaggtta
gatgagacgttaccccagctgtttccaccgctatgtcaggtaatccaggagagtagtctc
attgacctgacctcgctggttggtgacctccaatctcagatccccacgacccccactgcc
acacaacccaaggggtcagcagtcatcgctggtgctattcagaacaagcttggtgtatct
attgttatgtgtatgttgaaccgtgctgaggaagtttatacgtcaactgcggaagaatcg
ccaccttttcacacgcaatggatggaatgcgtccatctctttgcccaagcaatctgcatc
gtaagtgacacagccatcgctagacccttagggaagttccctctcgtgctggaccatttc
tcacgtttcgtcagtaagcaaccactcaatgcactagagaagaggttaagaaatttgata
gaccatgaggaatga
DBGET
integrated database retrieval system
