Lytechinus variegatus (green sea urchin): 121407205
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Entry
121407205 CDS
T11173
Name
(RefSeq) retinoblastoma-like protein 1
KO
K04681
retinoblastoma-like protein 1
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
121407205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lvg03000
]
121407205
Transcription factors [BR:
lvg03000
]
Eukaryotic type
Other transcription factors
Pocket domain Rb
121407205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RB_A
RB_B
DUF3452
TFIIB
Rb_C
Motif
Other DBs
NCBI-GeneID:
121407205
NCBI-ProteinID:
XP_041454101
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All DBs
Position
2:7774867..7810125
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AA seq
1096 aa
AA seq
DB search
MTDSPEEIILTTKDRFEELCMSLNLDDATKKTAWESYERICENYTLEGDKIQWLSCALYV
ACRRSVVPTVSNGTVEGNGVSLTQLLRSAKLSVIQFFNKMKKWSDMANLPQQFRDKVDRL
ERNFAVSTVIFKKYQPIFYHLFKEGDNTPRPPRSRKHRRLPCTSQDVFSFCWTIFVLVKG
NFPAISDDLVNSYHLLLCSLDLMFANAVLANRRDLLNPDFQGLPEGYASRDYRVPSEAPC
IIDKLCEVYGGLVLEAKSINEHWWKLHIQKLIDEEDLEGNLEKLSNLLDTNNFESNNKNI
CKKYEEYVLTIGDFDERIFLDKDADEEIGTPSKSAALRETEEAMRKPTSRKTKDLCPATP
LTNRRYLKEKDLKITPVSTATQAVSKLQALLTGRKLEASELLDGIFKECSENPAEGIASR
VKEMGEIFCQKYTQAHDEGNSGSPQDFAKRRLKLAESLYYKALENIMLAEKKRLKNLTHL
LEHDLFHRSLFACCVEVVIFAYNSQRTFPWILEAFEIPAFHFYKVIELILRAEEGLSRDI
VKHLNFIEESILQDYAWRNDSPLWDLLKDSNQGVPTCEDATIPGQTDGGVSGGGVKGAST
GQTTSSSASTNSGGQSQTLLSPIVHKRVVQLGGRTESILQSPTSAHDRFSSPSPGSARRR
LFTADAPPTTSSSMSSTPTESTNKATPSPAVISQSSASRAMKFTEIQSSATSQSTSSTST
SSSSNANTVLSPKKQFVVVHGIQGKDGTGNHRLIVSPVKVIYTSPAKARTAEGEPGSSTT
IAVPAPKPKRTGSVGIFFRKVYHLMNVRLLDLCHRLKLHDDLRRKIWTCLEHAIVHKTDM
MKDRHLDQIIMCTMYVICRVTQNQCSFQEIMRSYRFQPQASSHVYRSVLIHSNRKKDSNG
NSSNSSSRGSPEHKTVETPILMRSASTLPIPQPSSAPPTPTRLAGTASTFEDENRGDLIK
FYNSVFLQRIQAFAVRFETSPNGMTDRLEAPPLSPLPVPRPHMLSPRKVSNRHQLYVSPH
KQRMTSPRSAMTYVIQKSPAKVLQKMNTMVVKATERTKRQLLSESHESPSKRHCGAGDFL
QTRLATVKSERESASS
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgacggactcgccagaggagatcattttgacgacaaaagaccgatttgaagaattatgt
atgagtttaaatttggacgacgccacgaagaaaacggcttgggaatcatacgagaggata
tgcgaaaattacacgctagagggagataaaatccaatggctttcctgtgccttgtatgtg
gcatgcagacgtagtgtagtaccgactgtaagcaatggaacagtagagggcaatggcgtg
tctctaactcaactgcttcgctctgccaaactgagtgttatccagttcttcaacaagatg
aaaaagtggtcagacatggccaaccttccgcagcagtttagagacaaggtggaccgtctg
gagagaaactttgccgtctcaacggtcatcttcaagaaataccagccaatcttttaccat
ctcttcaaggaaggagacaacacacccaggccacctagaagtagaaaacataggcgactg
ccttgtacaagccaagatgtgttttcgttctgttggaccatctttgtattagtgaaaggt
aacttcccagcgataagtgacgatcttgtgaattcctaccacctccttctgtgtagcttg
gatctcatgttcgccaatgctgtgctggcaaacaggcgtgaccttttgaaccctgatttc
caaggtctcccagagggctatgctagtcgtgattacagggtgccgtctgaagccccatgc
atcatagacaaactctgtgaggtctacggtggactggtactggaggccaagtctatcaac
gaacactggtggaaacttcacatacagaaactcatagatgaagaggatttggaagggaat
ctggaaaagctttccaatctgctggataccaataactttgagtcaaacaacaaaaacatc
tgcaagaaatatgaggagtacgttttaacgattggtgactttgacgagaggatcttcctg
gataaggacgccgatgaggagattgggacaccatcaaaatcagctgcactcagggagaca
gaggaagccatgagaaaaccaacaagccgaaagaccaaagacctttgtccagcaacacca
ctgaccaacagacgctacctcaaggagaaagatctaaagatcacaccagtgtccactgcc
acacaagcggtcagcaagctgcaggccctgctaaccggtcgtaagctagaggccagcgag
ctcctggatggtatcttcaaggaatgttcagagaatcctgcggaaggaatcgccagtcga
gtcaaggagatgggagagatcttttgccaaaagtacacccaggcgcatgatgaaggaaac
tctggatcacctcaagattttgctaagcgaaggttaaaactagctgaaagtctttattac
aaggctcttgagaacatcatgttggcggaaaagaagagattaaagaatcttacacatctc
cttgagcatgacctgtttcacagatctctctttgcttgctgcgtggaggtcgttatcttt
gcatacaactcacagaggacatttccatggatactagaagcatttgagatccctgcattc
cacttttacaaggtcattgagctcatcctcagagcagaagaaggactttcaagagacatc
gtcaagcatctcaactttattgaggagtcaattctccaagactatgcatggcgaaatgat
tcacccctgtgggacctcctgaaggatagcaaccagggtgtgcctacctgcgaggatgcc
accatacccggtcagacagatggaggggtatcaggaggaggtgtgaagggggcatccacc
ggtcaaactacctcgtcctcagcgtcaacgaactctggtggtcagagtcaaacactcctc
tcacccatcgtccataagagggttgtccaactgggtggaagaacggaatctattctccag
tcgcccacctctgctcacgatagattcagctctccgtctccaggcagtgccaggcgtcgt
ctattcactgctgacgctccaccgacgacgtcatcatcaatgtcctctacgccaactgaa
tcaacaaataaagccacaccctctccagcagtgatcagccaatcatcggcatcaagagcc
atgaagttcactgagatacagtcttcagcaaccagccaatcaacatcgtctacctcaacg
tcatcctcgagcaacgccaacactgtcctctcaccaaagaaacaatttgttgttgtccat
ggcattcaaggaaaggatggtactggtaaccacagactcattgtcagtcctgtcaaggtc
atctacacttccccagcaaaggccaggactgcagaaggagaacctggatccagcacgacc
attgcagtaccggccccgaagcccaagaggaccgggtctgtagggatcttcttcaggaag
gtgtatcatttgatgaacgtgaggctccttgacctttgtcatcgtctaaagctccatgat
gacctgagacgtaagatctggacgtgtctggagcatgccatcgttcataagacagacatg
atgaaagacagacatcttgatcagatcatcatgtgtactatgtatgtcatctgcagggtg
acacagaaccaatgttcattccaggagatcatgcgtagctatcgcttccagccgcaagca
tcaagccacgtttaccgcagcgttctcattcactcaaatcgtaagaaagactcaaatggc
aacagctccaacagcagtagtagaggctcgccagaacacaagacagttgagacaccaatc
ttgatgcgatcagctagtaccttgcccatccctcaaccaagcagtgctcctcccactcct
accaggttagctggtacagcctccacgtttgaggatgaaaacaggggtgacctcatcaaa
ttctacaactcggtatttcttcagaggatacaggccttcgctgttagatttgaaacgtca
cccaacgggatgactgacagactggaggccccgcccctatcgcccctcccagtaccccgc
cctcacatgctgtcaccgaggaaggtctccaacaggcaccagttgtacgtttcaccgcac
aaacagcgtatgacaagccctaggagtgcgatgacctatgtcatacagaagagtcccgct
aaggtccttcaaaaaatgaacaccatggtagtaaaggccacagaacgcaccaaacggcaa
ctcctcagcgaatcacacgagtcaccatccaaacggcattgcggtgccggggacttcctg
cagacacgcttagcaacggtcaagtcagaaagggaatctgccagttcatag
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