Lytechinus variegatus (green sea urchin): 121407244
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Entry
121407244 CDS
T11173
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121407244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lvg03021
]
121407244
03041 Spliceosome [BR:
lvg03041
]
121407244
03036 Chromosome and associated proteins [BR:
lvg03036
]
121407244
Transcription machinery [BR:
lvg03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
121407244
Spliceosome [BR:
lvg03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
121407244
Complex B
121407244
Complex C
U2 SnRNP specific factors
121407244
Chromosome and associated proteins [BR:
lvg03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
121407244
TFTC complex
121407244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Beta-prop_EML
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
121407244
NCBI-ProteinID:
XP_041454147
LinkDB
All DBs
Position
2:8989537..9023613
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYALTLQRATGIVQCIHGNFAGTKQQELVVGRGKLLELIKIDPNTGKLYTVLSHEIFG
IIRTLMPFRLTGGSKDFIVVGSDSGRIIILEYNAAKNCLERVHQETFGKSGCRRIVPGQF
LAVDPKGRAVMVGALEKQKLVYILNRDAQARLTISSPLEAHKSNTFSFHIVGVDVGFENP
MFACLEIDYEDADSDPTGEAALATQQLLTYYELDLGLNHVVRKYSEPLEEYGNLLIAVPG
GSDGPSGVLICSENYITYKNLGDQPDIRMPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDDDMVTEIRMKYFDTVPVATSMNVLKTGFLFIASEYGNHYLYQ
IAHLGDDDDEPEFSSATPLEEGDTFFFAPRTLRNLEEVDQLESLSPILACQIADLASEDT
PQLYVACGRGPRSSMRVLRHGLEVSEMAVSELPGNPNAVWTVKKKSDDEYDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSSSLIGDDALLQIYPDGIRHIRADKRVNEWKTPG
KKSIVKCAVNQRQVVIALTGGELVYFEMDPTGQLNEYTERKEMNVDVKCMSLATVPSGEQ
RARFLAVGLDDNTVRIISLDQSDCLQPLSMQALPAPAEALCIIEMGGTEAREDTGERGSS
GGLFLNIGLQNGVLLRMVLDSVTGDLSDTRTRYLGSRPVKLFRINMQGSEAVLAMSSRSW
LSYWYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVSTQ
LKFTPRKFATHLENNNIVVIESDHNTYTDATKAQRKQQMAEEMVEAAGEEEKELAAEMAE
AFLQEELPESTFSSPKAGSGMWASTIRLLNPVQGQTLDMVELEQNEAAFSLAVVKFANRE
DETHVLVGTAKDVTLSPRTCSGGAIHTYLLTEEGKKLEFLHKTLVDDVPSAIASFQGRVL
IGIGRLLRIYDLGKKKLLRKCENKHIPNFITNIMTTGNRIIVSDVQESLHFLKYKRQENQ
MVIFADDSNPRWITATCLLDHDTVMSADKFGNVTVLRLPASINDNVDEDPTGVKALWDRG
LLNGASQKTDVISSFFIGETVLSLQKATLIPGGSESVVYTTLSGAIGVLVPFTSHEDHDF
FQHLEMHMRSEYAPLCGRDHLSYRSYYYPVKNVIDGDLCEQYNSMDLSKQRTVAEELDRN
PSEVSKKLEDIRTRFAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctctatgcactaactcttcagcgagccacaggcatcgtccagtgcatacatgga
aactttgctggcaccaagcaacaagagttggtggttggacggggtaaactcctggagttg
atcaagatagatcccaacactggcaagctctacactgtactaagtcatgagatatttggg
atcatcaggacattaatgcctttcaggctaacaggaggaagtaaagatttcatagttgtt
ggatcagactctggacgtatcatcatccttgaatacaatgctgctaaaaactgccttgaa
cgggtccatcaagagacatttggtaaaagtgggtgtcggcgtattgtacccggtcagttc
ctggctgtagaccctaaggggcgtgccgtcatggtgggtgcgttggagaaacagaagctt
gtatacatcctgaacagagatgcacaggctaggctgaccatctcatcccctttggaagcc
cacaaatcaaataccttctcattccacattgtaggggttgatgttggctttgagaacccc
atgtttgcgtgcttggagattgactatgaagatgctgatagtgatcctacaggggaagcg
gccctggcaacccaacaactacttacctattatgaactggacctggggctaaaccatgtg
gttagaaaatacagtgaaccattagaggaatatggaaacttacttattgcagtacccgga
gggagtgatggtcctagtggtgtattgatctgttctgagaactacatcacttacaagaac
ttgggagatcaaccagatatcaggatgccaataccacgcagacggaatgacttggacgat
cctgaaaggggtatgatatttgtttgcagtgcgacccacaaaacaaagtccatgttcttc
ttcctggcccaaactgagcaaggtgacatcttcaagatcacgttagagacagatgacgac
atggtgacagagatacgcatgaagtactttgacactgttccagttgcaacttccatgaac
gtcctgaagacaggcttcctcttcattgcatcagaatatggcaatcactacctgtatcag
attgcccatcttggagatgacgatgatgagcctgaattcagcagtgctacaccccttgag
gaaggggataccttcttctttgcacctcgtaccctcagaaaccttgaagaggtggaccag
ttggagagcctttctcctattctcgcttgtcagattgcagacttagccagtgaagacact
cctcagctctatgtagcgtgtggtagaggaccaaggtcatccatgagagttctaaggcat
ggattagaggtatctgaaatggctgtatcagagcttcctggtaaccccaatgctgtatgg
actgtcaagaagaaatcagatgatgagtatgatgcttacatcattgtgtctttcgtcaat
gccaccctggttctctccatcggtgagacggtagaagaagtgacagattctggtttcttg
ggtaccacaccgaccctctcatcatcacttataggagatgatgcactcttacagatctac
ccagatggtattcgtcacatccgtgcagacaagcgtgttaatgaatggaagacccctggt
aagaagtccattgttaagtgtgctgttaaccagagacaagtagtcattgcactgacgggt
ggagaactcgtctactttgaaatggatccaacaggtcagctgaatgaatacactgagagg
aaggagatgaatgttgatgtgaaatgcatgagccttgccactgtgccctcgggtgaacaa
cgagcaaggttcttagctgtaggtcttgatgacaacaccgtacgcatcatctctctagac
caatcagactgtcttcaacctctgagtatgcaagctctaccagcccctgcagaagctcta
tgtatcattgagatgggaggtactgaagccagggaagatactggtgagaggggtagctca
gggggtctcttcctcaatattggtcttcagaatggtgtattactaaggatggtattagac
tcggtgactggagatctttcagatacgagaacaagatacctcggttcaagacccgttaaa
ctcttcaggattaacatgcaaggatcagaagctgttcttgctatgtctagtagatcttgg
ttgagttactggtatcagtctcggtttcatctcacaccactgtcatatgaaaccttggag
tttgcttctggattcgcctcagagcagtgtcctgaaggaattgttgccatctccacaaac
acgcttaggatcttggccttggagaagctaggagctgtgtttaaccaggtatcaacgcaa
ctgaaattcacgcctagaaagtttgccactcaccttgagaataacaacattgttgtgata
gaatcagatcataatacatacacagatgctaccaaagcacagaggaaacaacagatggct
gaggaaatggttgaagcagcaggggaggaagagaaggagcttgcagctgagatggctgaa
gcttttctccaggaggagttgccggagtctaccttcagctcccctaaggctggatcaggg
atgtgggcatctacaatcaggcttcttaacccggtacaaggacagactctagatatggtg
gagctagaacagaatgaagcagcattcagtcttgcagtagtgaagtttgccaatcgtgag
gatgagacacatgtcttagtagggacagctaaagatgtgacattgagtcccaggacctgc
tctggaggtgctatacatacatacctactcacagaagaaggaaagaaactagaattctta
cacaagactcttgtggatgatgtaccatcggccatcgcttcgttccaaggaagggtcctc
atcggaataggaagacttctcaggatatatgatctgggcaagaagaaattactcagaaaa
tgtgaaaataagcacattccaaacttcatcacaaacatcatgacgaccggtaaccgtatc
atcgtgagcgatgttcaggagagtttgcactttctcaagtataagaggcaagagaatcag
atggttatctttgctgatgatagtaaccctcgatggataacagccacgtgcctcctcgac
catgacacagtcatgtctgctgataagtttggaaacgtcactgtgctgaggttacctgca
agcatcaatgacaacgtagatgaagaccctacaggggtgaaagcactttgggatcgtggt
ttgttgaacggagcatcccagaagactgacgtcatctctagtttcttcattggtgagaca
gtcctgtcgttacagaaggctactctcattcctggaggatcagaatctgttgtctatacc
actctatctggagccattggtgttctggtaccattcacctcgcacgaggaccatgatttc
tttcagcatcttgaaatgcacatgagatcagagtatgccccactttgtggaagagaccat
ctctcctacagatcatactactatcctgtaaagaacgtgattgatggtgatctgtgtgaa
cagtacaattctatggatctatccaagcagaggactgttgctgaagaactagataggaat
cccagtgaagtttcgaaaaagctggaagacatcagaacgagatttgccttctaa
DBGET
integrated database retrieval system
