Lytechinus variegatus (green sea urchin): 121407294
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Entry
121407294 CDS
T11173
Name
(RefSeq) exosome complex exonuclease RRP42-like
KO
K12589
exosome complex component RRP42
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121407294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121407294
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
121407294
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
121407294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
121407294
NCBI-ProteinID:
XP_041454215
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Position
2:complement(10711181..10721228)
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AA seq
288 aa
AA seq
DB search
MASVQLGEGEKTFIIHGIKDDLRSDGRTCLSYRNFELECGVVSNTSGSARLKLSNTQVLV
GVKAEMGPPNQLNPSRGTIEFFVDFSANASPKFAGRGGDELAGEISNMLGLVYKNEKMLD
YKSLCVIAGQCVWTLYADIVVLECGGNLFDAIALAVKAALYNTRIPLVTVQKDMDGTEDI
EVSSNPHDFITLDTKNLPVLVTVTKFDSGHIVDATLEEEACSMACIVAAVNKEGAIDGIM
KKGSGSLTIDSIHEMLDSAKQIGKDLNMSLDVFLSKKGREMSSKGFLS
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagttcaactgggtgaaggcgaaaagacatttataatacatggaattaaggat
gacctgcggtcagatgggagaacatgcctatcttatcgaaactttgaattggaatgtgga
gtagtgtccaacacaagtggatctgcaagattgaagctttcaaacacacaggttttagtt
ggtgttaaagctgaaatgggaccacctaatcaattaaatccttcccgcggcacaatagaa
ttctttgtagacttctcagccaacgcatcacccaaatttgccgggcggggtggagatgag
ctggcaggagagatatccaacatgcttgggcttgtctacaaaaatgaaaagatgttggac
tacaaatcactgtgtgtgatagctggtcaatgtgtatggacactctatgctgatatagtt
gtgctggaatgtggaggaaatctctttgatgccattgctcttgcagttaaagcagctctc
tataatacaaggatacctttggtgaccgtacagaaagacatggatgggactgaagacatt
gaggtttctagtaacccacatgatttcatcacattggataccaagaatctacctgtacta
gtcacagtcactaagtttgactctggtcacatcgtggatgcaacacttgaagaagaggca
tgcagcatggcctgcatagttgcagctgtcaacaaagagggcgccatagatggtataatg
aagaagggatcaggaagtctgacgatagacagtattcatgagatgcttgattcagccaag
cagattggtaaagacctgaacatgagccttgatgtgttcctgtcaaagaaaggaagagag
atgtcaagcaaaggattcctctcatga
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