Lytechinus variegatus (green sea urchin): 121407579
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Entry
121407579 CDS
T11173
Name
(RefSeq) polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
lvg Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lvg04040
]
121407579
04091 Lectins [BR:
lvg04091
]
121407579
Ion channels [BR:
lvg04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121407579
Lectins [BR:
lvg04091
]
C-Type lectins
Others
121407579
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
REJ
Polycystin_dom
PKD_channel
PLAT
Lectin_C
SUEL_Lectin
GPS
DnaJ-like_C11_C
Phyto-Amp
Motif
Other DBs
NCBI-GeneID:
121407579
NCBI-ProteinID:
XP_041454654
LinkDB
All DBs
Position
2:22220263..22265803
Genome browser
AA seq
2669 aa
AA seq
DB search
MWNVAFFILLIVKVDVNTAGAETEIICENQDGVIDCGENLISISSSVYGRTDASTCGLSY
TTDCVLDVAPALVFCNDQSQCTVEAGNNLFGDPCPGTQKYLNITYTCEDSLCETDWVYND
RNCYLFKESWKSWESAREYCSGFGADLASIHSEEENSFILGSIESHSWIGITDVESEGVY
TTFSDGTPIDFENFAANSHQDESRDCVKIKSPHGEWTWKGCLSSHHSVCKKAHAVNSTVH
PVTSQHATTTHRASTAVPPTSTSATTAVHETSTIHARTTTARTTTASTTGKATTQPSTTI
SASSESAHVVPTIEPTFIIVELIMYSNYESSLDNIFQVNDTILVIASIFGPFQPFSAQII
WSITDHLSGESIEHTIYSEDAVLVNFPVSSLFAINAIAVGTTHNLTSTVNATVLPTINIL
CPAHIYAGREVWCALLTDDIVEYSNYTFCFDGSACSTANPTYWSLADIPDPLIDRTSSME
GLFASFQNHLYSEIGSHTITAEIFQILAFSVQVDVIEKPECIRKLGFVNGNGNSTHPAGF
LRASDIGISANMELDEECNDPMTSDFKWWIFTSDENDVAVIAFEKITHIPQVTIPQGTLP
YGIHSLNLKVEMNHRTSGEVTGEEQIITWLEILPSPLVAVIKGGASRSHGISSSLIVDGS
TSYDPDGSSADLTFVWYCVMVDGETMYLSMDEAMQNTDDACFEDEEILENSHSSKVEIMS
SILKANVTLNFWLIVSKEGRASGSTQQSILLTPGLLPEIEIDCISNCNTYLLTAERLVLH
ASCSNCDSGDVSFQWSLQSDDSSIISDISTQTTTGLDQSYLVIKPHTFDSFSESTGIALR
VTGYLSNSTSGGYSEFSVQLNAPPTLGNCSVTPIEGYALQTDFTVTCQGFTDVDNPLTYE
IMSYSDVKVADGDFIGVGEGFQLYEGSESSQDGFNLPVGDGAHDYTILFQVNVKDNFMAS
TSVFFTCMVRPPTIDTGGANMTQELLNMTSSVESSVNTLLAVGDTGQATQLISALGSILN
SIGDGDDDAAADDEGRDTRSEIRSTLVDSIAAIPVESMTSLKQSSAALAVITQNKQEIST
DVQVKAANALSEMTSFLKAESGSHTQGQSTIESAGTVLVEGLSNIFSAAKETQTHISNNT
SPVEAEDEATPNKNLTKVALSAINDIQDAIVVGKIPSEEATIITSPTLSLALGSISKEKL
AETTFGGSDDDGIGRFEMPSQEGVLDDTLSNVNGTVVSLQTSALRWNPFSWGAGGDSLNS
SIIGIQLKVDNNALQVKDLSDDISVYLPVEEPFIGDPMVVHITKEFSASISVNQSSLPED
GALHLRVVAENEPLVVLTVCITNITINETSCVGNATVVRATDEDSVVNFTWSITVADLKV
ADGIMISLYDGIDEPLYVHDNITLSVFMHTSQCTFWNEDEESWDSTGCKVGPLSKPSSTH
CLCNHLTFFGSALFVPPNKINIFQDAKLFLTFVDNPIVVSFVMCILAGFVLVAVWARRKD
KRDAARAAVTVLDDNDPFHHYRYDVTIVTGMRRGSGTTATVTLTLMGKNGRSDPHVLHDR
FSPVLTRGSTDSFLLTTAEGLGEIQSLRLWHNNAGTSPHWYVSHCVVHDLESDERYYFIC
NSWMMIGGGGVGLDNTFHIASSKDLHKFGHLFTARTVRDLRDGHLWLSVLMRPKHSNFTC
LQRAFCCLSLLMCSMMTSIMFYGIPNDPADQVMDFGTFRITIKEIIIGIESSLIAFPINL
LIVQIFRHIRPSIKLRTAANKEKYMVKLKPEIAHSLSSIELTKKEDSERESADDKLTLKS
LTKSVQHKDREVSSQQSPERTSRHWVGGGDSSSTSSKDNNPVNASSASSTTSLPSCISLN
STLFHQEMEDFVLRSVSAVMKEWGSDKSSKRVEVFGHGGLEKVDRTRSETTDDTTTQSVK
QIPNYVKEGIEENSHDYDSDLMGKKCDGFTHNFYLYSRLMEMVKDLSVISSDRFYDPEEH
KQAMREAQTIVMTALDIETPPISPDESLLSDSVVEGKIKLKQRTRGLPHACVYIAWLLVF
ATVVASSYITMLYGLKYGKQTSIDWLISLFIATFQSIFITQPIKVLFLAIFVSLIFKQIE
PEEDFSDDIEELQVDDATQTRRALQKRRNTIAHYHPPATSTINSHLKNKQLQARMYSLLW
QIAGFLCFFYLLITITYSQRDRQAYWMTRGTKGLFFHHKNKDYALMNDFRSFLTWANSTL
LPSLLSEDRWGAEKQSTLIGGGLRLRQIRVKPSSCKTHPLFVDLINDCRAPFTSDSADRE
LYNASWSQPIVNTSAFLNSSQTVEEWSLSNYSPWHFYPDRSTGMWGHTMVLPNSGYIWVL
GADYEEAVNSLAEMVNARWLDARTRALFAEWTAYNANTNLFCVVTFLMETPASGGMLKLP
EVQAVRLHRYAANYKLFVIICEILFVLALFFVMYREYLRYKPIGIRKYLSDKWNLLEIAI
IVNCYVSAGLYTYRYIITKQLFHKMRDESVRFVSFRSAASSDNALGYSFAVIIILSCVKF
LYLLRLNPRMYLLTAVMSDCYHEVTAFSFLLLVLVLTFAFPMSITFGSLPHYRDITKSAI
TLFTTLPGNFVYDDLMSVHRTIGPLTLLIFQYWGCYLFLDLLIAALNESMVTIRRNPPPP
SGNRMIGLLLLSKIFSLLGIPERFHIGLD
NT seq
8010 nt
NT seq
+upstream
nt +downstream
nt
atgtggaatgttgctttcttcattttgctcatcgttaaggtggacgtcaacaccgctggc
gcagagactgagattatttgtgagaaccaagatggagtaatagactgtggtgaaaatctt
atcagtatctcatcctctgtctatgggcgaactgatgcatccacttgtggcttgagctac
acaactgattgtgtcttggatgtggcccctgcattggttttctgcaatgatcagtcacaa
tgcacagtggaagctggaaataatcttttcggggatccatgcccaggaactcagaagtat
ctaaatatcacctacacatgtgaagattctctctgtgaaactgactgggtttataatgac
agaaactgttatcttttcaaggaaagttggaaatcttgggagtcagcaagagaatattgt
tctggatttggtgctgacttagccagcatacatagtgaagaggagaattcattcatactt
ggatccattgaaagtcattcatggataggaataactgatgtggaaagtgaaggagtatat
actactttttcagatggaacccccattgactttgaaaattttgctgctaacagccatcaa
gatgaaagtcgtgattgtgttaaaattaaaagtccacacggagaatggacttggaagggg
tgcttgagttcacatcattctgtgtgcaaaaaagcccatgctgtaaacagtactgttcat
cctgtgacaagtcaacatgccactaccactcatcgtgcatctaccgcagttcctcccacc
tctacatctgctaccactgctgtccatgaaacttctactattcatgcaaggactacaacg
gcaaggactacaacggcaagcactaccggaaaagcaacaacccaaccttctacaacaatt
tctgcttcttcagagtcagctcatgtggtgccgactattgaacctactttcattattgtg
gagctgattatgtactccaactatgaatccagccttgataacatcttccaggtcaatgac
acaatccttgttattgcatctatctttggcccctttcaaccgttttcagctcagattatt
tggtctatcacagaccatctatcaggtgaatcaattgaacatacaatctactctgaagat
gcagtgcttgtcaatttcccagtatcttcactttttgccattaatgcaattgctgtcggg
accacccacaacctcacatctactgtgaatgcaacagtacttcccacaataaacattctc
tgccctgctcatatttatgctggcagagaagtttggtgtgctcttctcacagatgacatt
gttgagtattccaactataccttctgttttgatggtagtgcttgctcgactgcaaaccca
acttattggtctttagctgacatcccagatcccttgatagaccgcacttcttctatggag
ggactttttgccagctttcaaaatcatctgtattcagaaattggatctcatacgataaca
gcagagatatttcaaattttggccttttcagttcaagtagatgtgattgagaaacctgag
tgtataaggaaacttggatttgtgaatgggaatggcaacagcacacatccagctgggttc
ctcagagcatctgacattggcatctcagccaacatggaacttgatgaagaatgcaatgac
cctatgacctctgacttcaagtggtggatattcacatctgacgaaaatgatgttgcagtg
attgccttcgaaaagatcacacatatccctcaagtgacaattccacaaggaacactccct
tatggaattcatagcttgaatctcaaagtggagatgaatcatagaacgtcaggagaggtc
actggtgaagaacagatcattacctggcttgaaatcctgccatctccattggtagcagtg
atcaaaggtggagcttctcgatctcacggtatatcttccagtttgatagtagatggatca
acttcatatgaccccgatgggtcatccgctgacctgacctttgtgtggtactgtgtgatg
gttgatggtgaaaccatgtacttgtctatggatgaagctatgcaaaatacagatgatgcc
tgttttgaagatgaagaaatcttggaaaactcacactcttccaaggttgaaattatgtct
agcatcctgaaagccaatgtaactctgaatttctggctcattgtttccaaagaaggaaga
gcatccggttcaactcaacaaagcatcctgttgactccagggcttttgccagaaatagaa
atagattgcatcagtaactgcaacacatacttattaacagccgagcgtcttgtcctgcat
gcctcatgcagcaactgtgacagtggagatgtgtctttccaatggagtcttcaatcagat
gatagctcaattataagtgatatatctacccagactacgacaggtcttgaccaatcctac
ctggtcatcaaacctcatacctttgattccttttctgaaagcactggcattgctttacga
gttacaggttacctgtccaattccacttcaggcggctattctgaattcagtgtccaactc
aatgctccacccacattaggcaactgttctgttacacccatagaaggttatgccttacaa
actgacttcactgtgacatgtcaaggatttactgatgtggataaccccctaacttatgag
attatgtcgtacagtgatgtcaaagttgcggatggagacttcattggtgttggagaaggt
tttcaactatatgaaggcagtgagtcatcacaggatggtttcaatctccctgttggagat
ggtgcacatgattatactatcctgtttcaggttaatgtgaaagacaacttcatggctagt
acatcagtgttctttacatgtatggtccgccctcctaccatagatactggaggggcaaac
atgactcaggaactgctgaacatgacatcgtctgttgaatccagtgtgaatacgttatta
gcagtgggagatacaggacaagctacgcagttgatcagtgcccttggttcaatcctgaat
tccattggagatggggatgatgatgctgctgctgatgatgaagggagggataccagatca
gagatccgctctactcttgttgactctattgctgctataccagtagagtccatgacatcc
ctgaaacaaagttctgctgccctcgctgtcattactcaaaacaagcaagaaatttctact
gacgtacaggtaaaagccgcaaatgcactgtctgaaatgacatcctttctgaaagctgaa
tctgggtctcatactcaaggtcaaagtactatagagtctgctggtaccgttctggttgag
gggttgtcgaatatcttcagtgccgctaaggaaactcaaactcacatttctaacaacact
tctccagttgaagctgaagatgaggcaacacccaataagaacctgaccaaagttgcccta
tcagcaatcaatgacatccaagatgcaatagttgtaggcaagattcccagtgaagaagcg
accatcataacatctcctacacttagcttagcattggggagtatcagcaaggaaaagctg
gctgagacaacctttggaggttcagatgatgatggtatcggtagatttgaaatgccatct
caagaaggtgtgttggatgatactctaagcaacgttaatgggacagtggttagcttgcag
acatcagctctgagatggaaccctttcagttggggagctggtggtgattccctgaactct
agtatcattggaatacagttgaaagtggataacaatgcattacaagtcaaagacctgtct
gatgacatcagtgtgtacctaccagtagaagaaccctttataggtgacccaatggttgtc
catatcaccaaggagttctccgcatctatctctgtcaaccaatcatcgctcccagaggac
ggagccttacaccttagagtcgtagctgagaatgaacccttagtagtccttacagtctgc
attaccaatattactatcaatgagaccagctgtgttggtaatgctactgtggtacgtgcc
accgatgaggatagtgttgtgaattttacatggagcatcactgtagctgacctaaaagtt
gcagatggtataatgataagtctgtatgatggtatagatgaacctctctatgtacatgac
aacatcacactctctgttttcatgcatacatcacaatgtactttttggaatgaagatgaa
gagtcatgggacagcacagggtgtaaggtcggtcctctctctaagccctcgtcaacccac
tgtctctgcaatcatctgaccttctttgggtcagcactctttgttccaccaaacaagatc
aatatcttccaggatgctaagttattcctgacctttgtggataaccccattgtggtcagc
tttgtgatgtgtattctggcaggctttgtcttagtggcggtatgggcaaggaggaaggat
aaacgagatgctgcaagagctgcagtcactgtgttggatgacaatgacccattccatcat
taccgttatgatgtcaccatagtcacagggatgcgccgtggttcaggcacaacagcaact
gttacactaactctgatgggcaagaatggtcgcagcgatccacacgtcctgcatgacagg
ttctcacctgtcttgaccagaggttcgacagattcgttcttgttgaccactgcagaaggt
ctcggagaaattcaatctttaaggctgtggcataacaatgctggcactagtcctcactgg
tatgtgagccattgcgtagtccatgatctggagagtgacgagcgctactacttcatctgc
aacagttggatgatgattggaggtggaggggttggtcttgacaacaccttccatattgca
tcatccaaagacttgcacaagtttggacacctgttcactgccaggactgtacgtgatctg
cgtgatggccatctgtggttgtctgttctgatgcgtccaaagcacagtaacttcacctgt
ctgcagcgagcattctgttgcctgtcccttctcatgtgctctatgatgacaagcattatg
ttctacggaatcccaaatgatccagccgatcaggtcatggactttggcacttttagaatt
accatcaaagagatcatcatcggcattgagagctctctaatcgccttcccaatcaatctc
ctcattgtgcagatcttcagacacatcaggccaagtatcaaacttcgaacagctgctaac
aaagaaaaatacatggtaaaactgaagcccgaaattgcccattcactttcaagtattgaa
ttgaccaagaaggaagattcggaaagggagtctgctgatgataaattgacattaaaaagc
ctgacaaaatccgtccaacataaagacagagaagtctcttcccaacaatcaccagaaagg
acttctcgtcattgggttggtggaggtgatagttcttccacatcttccaaagataacaac
cctgtaaacgcctcatctgcttcttctaccacttctctgccatcatgcatttctttgaat
agtacgctattccaccaggagatggaagactttgtccttcgatccgtctctgcagtcatg
aaagaatggggaagtgacaagagttcaaagcgtgtagaggtatttggacacggagggcta
gagaaagtcgatagaacacggagtgaaactactgacgacacaaccactcagtcagtcaaa
caaatacctaattacgtgaaagagggaattgaagaaaatagccatgactacgattctgat
ctcatgggaaagaaatgtgatggtttcacccataacttctacctgtactcacggttgatg
gaaatggtcaaggatctatcagtcatatcttcagacaggttctatgaccctgaagaacac
aaacaagctatgagggaagcccagaccatcgtcatgacagcattggatattgagacacct
cccatatcacctgatgagtctctgctatcagattctgtggtagaaggaaagattaagctg
aaacagagaaccaggggtcttccacatgcatgcgtgtacattgcatggttgttggtgttt
gcaaccgtggtcgcttcttcttacatcacaatgctttatggcctcaaatatggcaaacaa
acaagcatcgactggttgatctctctgtttatagctacctttcagagcatcttcatcaca
cagcccatcaaggttctgttccttgccatctttgtttcacttatcttcaagcagattgaa
ccagaagaagacttcagtgatgacattgaggaactccaagtagatgatgctacacagact
cgcagagcacttcagaaacgaaggaacaccatcgcccattaccatcccccagctacctcc
accataaactcccacctgaagaacaagcaactgcaggctcgcatgtattccctgctgtgg
cagattgctggtttcttatgtttcttctatctgctcatcactatcacatacagtcagaga
gataggcaggcgtactggatgaccagaggtacaaagggactcttcttccatcacaagaat
aaagactatgcattgatgaatgacttccgtagtttcctgacgtgggctaactcaacactc
ctgcctagtcttcttagtgaggatagatggggagccgagaagcaatccacattgattggt
gggggtctgagactaaggcaaatcagggttaaaccaagttcctgtaaaactcaccctttg
ttcgtagacctgatcaatgactgccgagccccttttacttcggattcagcggacagggaa
ttatacaatgcatcttggagtcagcccatagttaacacatctgccttcttgaactcatct
cagacagtggaagagtggagtctttccaactactctccctggcacttctacccagacaga
tctacaggaatgtggggccacacaatggtccttccaaacagtggctacatctgggtactg
ggcgccgactacgaagaggctgtgaattccttggcagagatggtgaatgcaaggtggttg
gatgctcgcaccagagcgctgtttgcagagtggacagcatacaatgcaaacaccaatctt
ttctgtgtagttacattcctcatggagacccctgcatctggtggaatgctgaagctcccc
gaggtacaagcagttaggctgcaccgttacgctgcaaactataaactctttgtcatcatc
tgtgaaatcctctttgttttggccctcttctttgtcatgtatcgagagtacctcaggtac
aagcccatcggtatcagaaagtacctcagtgacaaatggaacttgttggaaattgccatc
attgtcaactgctatgtatctgcaggattatacacctaccgctacattatcaccaagcag
ctcttccataaaatgagagacgaatcagttcgctttgtaagtttccgttctgcagctagc
agtgacaatgctctaggatatagctttgcagttatcatcattcttagctgtgtcaagttt
ctttatctcttgcgtctcaaccctcgcatgtatcttctcactgctgtcatgtctgactgc
taccatgaagtcactgcattcagctttctgctcttagtcctagtacttacctttgctttt
cccatgtccatcacctttggtagccttccccactatcgtgatatcaccaaatcagcaatc
actctcttcaccacacttccaggtaattttgtctatgatgacttgatgtccgttcatcga
acgattggtccgcttactcttctgatattccagtactggggttgttatttatttttagat
cttttgatagctgccctcaatgaaagcatggtgaccatcaggagaaatcctcctccacct
tcagggaacagaatgataggtcttctgcttttgtcaaagatattctctttgctgggtatc
ccagaaaggtttcacataggactggattag
DBGET
integrated database retrieval system
