Lytechinus variegatus (green sea urchin): 121407994
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Entry
121407994 CDS
T11173
Name
(RefSeq) RNA-binding protein 39-like isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
lvg Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lvg03041
]
121407994
Spliceosome [BR:
lvg03041
]
Common components
Common spliceosomal components
General mRNP proteins
121407994
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_5
RBD_DEAH11
RRM_occluded
PRP38_assoc
RRM_7
CDC27
RRM_8
Motif
Other DBs
NCBI-GeneID:
121407994
NCBI-ProteinID:
XP_041455217
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All DBs
Position
2:36629560..36656151
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AA seq
643 aa
AA seq
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MAEDLDVEAMLEAPYMYKKEEAAPEKDDQPTLEETEEEAPASKKKEERRRSRSRSKGRKR
SRSKSKERHRDRKDRDRGRDRDRERDRDRGDRDRDRDRDRDRGDRRDRDRDRDRRRSPPR
RRSRSRERYGGYRGGDRWGGGGYRGGRGGYYHRDREEDNYRSRRSRSKERNKEISPVRDD
PDADTRDARTVFVMQLSQRAKERELKEFFSSVGKVRTVKIITDRNSRRSKGVGYVEYDSA
DSVPLALGLNNQKLLGVPIIVQPSHAEKNRSAGQNVTLQKVNSGPMRLYVGSLHYNITEA
MLRGIFEPFGKIDNIQLMMDTDANRSKGYGFITFHDAEDAKRALDQLNGFELAGRPMKVN
HVTERNEQGQQTPSFLDSEELDKRGITLNTTGRLQLMAKLAEGTGFQIPAAAAEALHPLS
QVPGMGLPGLQVNPTQMTLPQPAAGLNLQESLQAAQLQAQQSAQALAAATASAQQTNLAL
GMGAVPDVLSGIPPLAAGLLPEPVPQVAPPVPQVQAPAPPAAAAGGPTGAGSTACFMLSN
MFDPQAETMIGWETDIRDDVIEECNKHGGVLHIHVDKASPQGNVYVKCPNAQIAMAAVSN
LHNRWFAGKMITAAYMPVANYHAIFPQAASATMLLQPSTPRRV
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggatttggatgttgaggccatgttggaggccccctacatgtacaaaaaagag
gaagccgccccagagaaagatgatcaacccacacttgaagaaacagaagaggaagccccg
gcatcaaagaaaaaggaagaaaggaggaggagtcgcagcaggagcaaaggaaggaaacgc
agccgcagcaagagcaaagaaagacacagggatcgcaaggatcgcgacagaggccgagac
agggaccgtgaaagagaccgggacaggggagaccgagacagggatagagatcgtgacagg
gaccgaggcgacaggagggatcgtgacagagacagggacagacgaaggagcccgccgagg
agacggagccgaagcagggagcgctacggagggtacaggggaggagaccgatggggtgga
ggaggctataggggtggtcgaggtggctattatcacagagacagggaggaagacaactac
agatccagaagatcacgcagtaaagaacgcaacaaggaaatcagccctgtgcgggatgat
ccagatgcagatacgcgtgatgccagaactgttttcgttatgcaactttcacagagagcc
aaagaaagggaactcaaagaattcttctcatcagttggaaaggtgagaactgtcaaaatc
atcacagatcggaactcaaggagatcaaaaggagtaggctatgtggaatatgattctgca
gactcagtacctctggcactaggactcaataatcagaagttactaggtgtccccatcatc
gtacagccgtcccatgcagagaagaatcggtcagctggtcagaatgttaccctgcagaaa
gtcaattcaggtcctatgaggctgtatgtaggatctcttcattataacatcacagaagct
atgctccggggcatctttgaaccgtttggtaaaattgataatattcagctcatgatggac
acagacgccaatcgatccaagggatatggttttattactttccatgatgccgaggatgcc
aagagggctctagatcagttgaatggatttgagttagccggaagacccatgaaagtcaac
cacgttacagagaggaatgaacagggtcaacagacgccctcgtttttagatagcgaagag
cttgataagagaggtatcacactcaatactaccggcagattgcaactcatggctaaacta
gcagaaggcactggtttccagatccctgctgcagcggcggaagcgttgcatccgctgagc
caggtaccagggatgggtctaccaggtctccaggtgaatccaacccagatgactttacca
cagccagcagctggtttgaacctacaggaatccctgcaagctgctcagctacaggctcaa
cagagtgcgcaagctcttgcagcagccactgcttcagctcaacagaccaatttggcacta
ggaatgggagccgtaccagatgtgttatcaggcatcccacctctcgcagctggtctatta
cctgaaccggtacctcaggtagcaccgcccgtaccacaggtccaagcaccggcaccacca
gcagcagcagcaggtggacctactggagctggatctacagcttgcttcatgctctccaac
atgtttgatcctcaagcagagacaatgataggttgggagactgatatccgagatgacgtg
attgaggaatgtaataaacacggaggagtgcttcatatacacgtagataaagcatcgccg
caggggaatgtttatgtcaaatgcccaaatgctcagatagctatggcagctgttagtaac
ctacacaacagatggtttgcaggtaaaatgatcaccgcagcctacatgccagtggccaac
taccatgccatctttccgcaagctgcgtcagctacaatgctgcttcaacccagcacaccc
aggagagtatag
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