Lytechinus variegatus (green sea urchin): 121408057
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Entry
121408057 CDS
T11173
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121408057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lvg03021
]
121408057
03036 Chromosome and associated proteins [BR:
lvg03036
]
121408057
Transcription machinery [BR:
lvg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121408057
Coactivators
SAGA/TFTC/STAGA complex
121408057
Chromosome and associated proteins [BR:
lvg03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
121408057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
DUF1254
Motif
Other DBs
NCBI-GeneID:
121408057
NCBI-ProteinID:
XP_041455314
LinkDB
All DBs
Position
2:complement(38723445..38745186)
Genome browser
AA seq
990 aa
AA seq
DB search
MAGAKSIEDIFSSEVDEKEVSALVGSLVTKLAPQNPKAASGPSQDATVTRNHVNDNSSVH
AQTGPGGLTTLKQAEPGISIHANATRQTMQDSHLGTTGAPTTPGLNHENAPGNIHANDNA
TQGNGQNNHGIGSTSIADIVKRDSQPPAISNMMTKPPTATTVSVSQQSPAIVAQITGAGL
QKPNEPPISRPVSGNAMGQIRTSVGNDQQIVKVVSVPSMPSGSAVQNTNSSKNEHGATAN
MNSISNQNVSSVSAGSAKEQLLVRQQTLPSNDQSGAMKPRIVVQPSIAATIQQATSGVAT
ISGVPSGNMTLGNANQKVVTINVANPATQTGGRPGQYVVNTVPGSKAVSPQIITQTVRMP
TGHHVIAPRAQLGGQVQIRLPPGTTLPPGVVLINKGGTVQAVMGNPAAIQAHVAGAPGMT
TYRHVQPGIVTSTAQPGRILTSVGGSNASVVSSPQVTTTRSGSPVVIASGTPTTAMRGAT
AANASSQQTSSLPKATGKGQGSSSSNSGGQLSSSAMDNVKKCRNFLTTLIKLASNANQPP
ETVQNVKMLVQSLIDAKIEPEEFTLKLQKELNSSPQPYLVPFLKRSLPLLRQTLQRGSSG
SNITTLMGPLPAAASGSADGKPVKPAITKITPAAAAASIAAEAKGGKQSQQASQKHSSSK
NSKASSPGRSPSPQTKPGVSKSSKSSSQSSSKSSRSSGSKSSSSKSSGGKATPRKDKSKD
TSASFSRDDDDINDVASMAGVNLSEESARILATNEAFVGTQLRSCEDEKFLHKTPLQHCM
SKICSKHGISDATPAVLDVVSLAVQERLKQVVEKLSVISQHRLEIYRSDTRYEPMNDVRS
QLKFFEQLDALERKRRDEQEREILLRAAKSRSKQEDPEQLRLKQKAKEMQQMELEQLRQQ
EANLTALAAIGPRKKRKLDSETSSSSPGGASGSSSSSLLSTLNSTSSNTTPFLRTQFRRT
KRVNMKDLLYLMEQEPETKRSQLLYKMYLK
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtgcgaagtccattgaagatatattttcttctgaggttgacgaaaaggaggta
tctgcgttggttggatctctcgttacaaaactagccccacagaatcccaaggctgcgtct
ggaccatcacaagatgccacagtgacaaggaatcatgtcaacgataactcttccgtacat
gcacaaactggacctggcgggctaacaacgttaaaacaagcggagccggggatttcaata
catgcgaatgcgacaagacaaaccatgcaggattcccatttgggcaccacgggcgcacca
acgacgccgggtctcaatcacgagaatgcgcctggcaatatccatgcaaatgacaatgca
actcaagggaatggtcaaaataatcatggaataggatcaacatctatcgctgatattgtg
aaacgagactcacagccaccggcaatttcaaacatgatgacgaagccgccaacggctacg
accgtttcggtgagccaacagtcacctgcaattgtggcacagatcaccggagcgggcctt
caaaaaccaaatgaaccgccgatcagcagaccagtttctggtaatgcaatgggtcaaatt
agaacttcagttggcaatgaccaacaaattgtgaaagttgtttcagtgcctagcatgcca
agtggcagtgctgtgcaaaatacaaactcttcaaaaaatgaacatggtgcaactgcaaat
atgaattctatttctaatcaaaatgtaagctcagtctcagctgggtctgccaaagagcag
cttctcgttaggcaacagacattaccaagtaatgatcaatcaggtgcaatgaaaccaagg
attgttgttcagccaagcatagcagcaacaattcagcaagcaacttctggagtcgctaca
atatctggtgttccatcaggcaacatgacactgggcaatgccaatcagaaagttgtgaca
attaatgttgctaatccagccacccaaacaggaggcagaccagggcaatatgttgtaaat
actgttccaggaagtaaagctgtatcgcctcagattataacgcagacagtacgaatgccc
actgggcatcatgtgattgctcctagagcacagcttggtggacaggttcagatacgtctg
cctccaggcaccaccttgccacctggagttgtattaatcaataaaggaggaacagtacaa
gctgttatgggaaatccagctgccattcaagctcatgtagcaggagctcctggaatgaca
acataccggcatgtccagccaggaatagtcacctctacagctcagccagggaggatccta
acatcagttggtgggagtaatgcatctgttgtcagcagtcctcaagttacaaccactcgg
tcaggttcacctgtagtcattgcctctggaacaccgacaacggcaatgagaggagctaca
gctgcgaatgcatcttcacaacaaacctcatcattaccaaaggccacaggcaagggtcag
ggtagctcttcatccaactctgggggtcagctctcaagttcagccatggataatgtgaag
aaatgtaggaactttctgacaactttgatcaagctagcttccaatgcaaatcaaccacca
gagactgttcaaaatgtcaagatgctggttcagagcctcattgatgccaaaatcgagcca
gaggagtttaccctcaaacttcagaaggagctcaactcttcaccacaaccataccttgtg
cctttccttaagaggagtttacctctattaagacaaacgttacagcgagggagttcagga
tctaacatcacaaccttgatgggacctttaccagctgcagccagtgggtcagccgatggc
aaacctgtcaaacccgccatcaccaaaatcacacctgctgcggcagcagcatctattgca
gctgaagccaagggtggtaagcagtcacagcaagcatctcagaagcattcgtccagtaag
aactccaaggccagttctcctggtcgctctccaagccctcaaaccaaaccaggtgttagc
aagtcatccaaatcttcatcgcagtcatcgagcaaatcatcacggtcatcaggaagtaaa
agtagttctagcaaatcttctggaggaaaagctacgccgaggaaagacaagagcaaagat
acatctgctagctttagtcgagatgatgatgacatcaatgatgtagcatcaatggctgga
gtgaatctgtcagaggagagtgcccgtattcttgccaccaacgaagcctttgtaggcact
cagctcaggtcttgtgaagatgagaaatttctccacaaaacaccattacaacattgcatg
agcaaaatatgttcgaagcatgggatttcagatgctacaccagctgtattagatgtggtt
tcactggcagttcaagagagattaaaacaagttgttgaaaagctgagtgttatatcacaa
catagattagaaatatataggagtgatacaagatatgaaccaatgaatgatgtacggtca
cagctaaagttctttgagcagctagatgcgttagaaagaaagagaagagatgaacaagaa
agagaaatacttcttcgagcagccaagagccggtcaaagcaagaggaccctgagcagttg
agattgaagcagaaagcaaaagaaatgcaacaaatggaattagagcagctgagacaacag
gaagctaatcttacagcattggcagctattggtccaaggaagaagaggaaactagattca
gaaacctctagttcatctccgggtggtgccagtggatcatcatcatcatcattattaagt
accttgaactctacaagctccaatacaactccattccttagaacacagtttcgtcgcacg
aagcgagtaaacatgaaggatttactctacctaatggagcaagaaccagaaaccaaaagg
tcacagctcctctacaagatgtacctcaagtga
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