Lytechinus variegatus (green sea urchin): 121408183
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Entry
121408183 CDS
T11173
Name
(RefSeq) neurogenic locus notch homolog protein 1-like isoform X1
KO
K02599
Notch 1
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
121408183
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
EGF_TEN
Reeler
GPR128_N
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
121408183
NCBI-ProteinID:
XP_041455480
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All DBs
Position
2:complement(47168078..47225947)
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AA seq
1642 aa
AA seq
DB search
MNVRITIRVPRAPILLFGTLFLLVTQSCGYPTGAPVDSNPEICSSLTPGHGAIPQTSPSP
FTITPIVNSYVPNGNVPMIIEAVNGSFYRGLILQARERGETTPIGTLFLLPNDYLQVVNC
EASSDTITHTNNDIKPTSVTVVWVAPPSDVGDVEFVASFVSTNQIYWVNVASSPIYGPNG
PDPTDPPATENPIPVITCADTPCLNGGTCFTSNDGEGFVCLCADGYTGVTCETMVMAVVT
CADEPCRNGGTCFTSNSGSGFVCLCPSSEWEGDTCETPVITCNDDPCKNGATCFTSNSDS
GFVCLCAGDWTGRTCESLITCNDDPCKNGATCFTSNSDSGFVCLCAGDWTGSTCESLISC
NDDPCRNGGTCFTSNGDSGFVCLCAGDWTGNTCESPIACADDPCQNGATCFTPNTGAGYF
CICGDDWTGTNCETPITCDDDPCLNGASCITPIGVDNEYICLCTAAWTGPVCDTAITCSD
DPCLNGATCTTPISGIGFDCACATGWTGETCEINAVTCNDDPCLNGATCATPASGNGFTC
MCATDWTGERCEISTVTCNDDPCLNGATCATPASGNGFTCMCATDWTGERCEISTVTCND
DPCLNGATCATPASGNGFTCTCTADWTGDRCEISTVTCNDDPCLNGATCATPASGNGFTC
MCATDWTGERCEISTITCNDNPCLNGATCATPASGNGFTCMCATDWTGERCEISTVTCND
DPCLNGATCATPASGNGFTCMCATDWTGERCEISTLTCDDNPCLNGATCTASNTGITCNC
VDGWEGDYCDTTESYCLLNPGICQNNGVCSDNDFSRFTCDCEGTGYTGPQCIIKVTTCAD
NPCQNGATCNPPINSEGYSCTCAVGWLGVNCETRNWCDPEPCQNGGVCSFNAENTNFVCD
CGDEYLDDICTVINHCLSEPCQNNAPCTNNADNTGFVCDCGEDFLSDTCEVINHCADDPC
QNGRPCSNTDDNSGFVCDCGRAFVGDNCEYGNFCINFPCKNGATCSNNANNDDFVCTCDE
NSGFTGPTCEDPIIPPACDSNPCANGAGCSEENDGFVCQCTNGWMGTTCETQDFCVDTPC
QNGRPCSNNDDDTGFECSCGNRYVGDRCEFTNFCRGNPCQNGRPCDNNENNDGFLCFCGD
EYLGDTCDVINFCEGEPCDNGRPCSNNVDNTDFVCDCGDEYLGIVCDIRNFCQNDPCQNA
RPCSNNNDNTGFVCNCGDDFIGDTCEFTNYCSGDPCDNNQPCTNNDDNTGFVCNCEDDFI
GDTCQHTNFCLGDPCRNGVPCTNNQANNNFRCDCGEEYLGFRCQWTNFCFGDPCENERPC
SNNDDNSDFECDCGNDFIGKMCEFPSSTTDFCVDDPCQNERPCSNNEDEDGFVCDCGDDY
IGNTCEFTNFCKDDPCENQRTCLNNDDNTDFQCDCGDEFIGNNCEFTNHCRSAPCMNEGL
CSNNNDNSDYVCNCRDTGFTGPTCEDIDMSTESPIDCSGPSPCQNEAVCILDTCVCQIGY
SGIYCEIAPTEPPVEGCGGPLPCENGARCLSDLCVCQAGFTGTLCETNIDDCASEPCPSQ
TSTCVDLIDGFACSCINGFTGELCNIADNRIQDTRNQSNLLIDPWWIALICLIAVMVLIV
IGLSICTCRTVKAAKTKSDINP
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtacggataaccattcgggtgcccagagcaccgattcttctctttgggacatta
tttcttctggtgacccagtcttgcggatatcccacaggggctcctgtggactcgaaccct
gagatctgtagcagcctgacacccggtcatggtgccattccacagacttcaccctccccg
ttcacgatcacaccgatcgtcaactcgtatgtacctaatggaaatgttcccatgataatt
gaagcagtaaacggatccttctatagagggttaatactccaagcccgtgagaggggagag
accacacccatcggaaccctcttcctactccccaacgattacctgcaggtcgtcaactgc
gaagcatcctcggatacgatcacacatacgaacaatgatatcaagcctacttcggtgacc
gtcgtctgggtcgcaccgccatcggacgtcggcgatgtcgaattcgttgcaagcttcgta
tcgactaatcagatttattgggtaaacgtagcatcatctcctatttacgggcctaatggt
ccagaccccaccgatccacctgcaactgaaaatcccattcctgtaatcacatgtgcagat
actccctgcctaaatggaggcacttgtttcacctcaaatgacggagaaggatttgtgtgt
ctatgcgcggatggatacactggagttacctgtgaaacaatggtcatggcagtggtgaca
tgcgcggacgagccgtgtcggaatggagggacttgcttcacttctaactctggctccgga
ttcgtatgtctttgtccgtcatctgaatgggagggtgatacgtgtgagactccagtcatc
acgtgcaacgatgatccatgcaagaatggcgcaacctgtttcacatccaacagtgattct
gggtttgtttgcctatgtgctggggactggacaggaagaacatgcgaaagtctcattacg
tgcaacgatgatccatgtaagaatggcgcaacctgtttcacatccaacagtgattctggg
tttgtttgcctatgtgctggggactggacaggcagcacatgcgaaagtctaatctcgtgc
aacgatgatccgtgcaggaatggtggcacctgcttcacatccaacggtgactctggattt
gtttgcctatgtgctggggactggacaggcaatacatgcgaaagtccaatcgcatgtgct
gatgatccgtgccaaaatggagcaacatgtttcacacctaacactggtgcaggttatttt
tgtatctgcggggatgactggactggcacaaactgtgaaactcctattacgtgtgatgat
gatccctgtctaaatggtgcttcctgcataacacccatcggtgttgataacgagtacatt
tgcttatgtacagctgcgtggactggtcctgtatgtgatacagctatcacgtgtagtgat
gacccatgtttgaacggcgccacatgcacaactccgatcagtggcatcggttttgactgc
gcatgtgcaacaggctggacaggagaaacttgtgaaatcaatgctgtcacgtgcaacgat
gatccatgtttgaacggcgccacgtgtgcaactcctgccagtggcaacggctttacttgc
atgtgtgctacagactggactggagagagatgtgaaataagtactgtcacgtgcaacgat
gatccatgtttgaacggcgccacgtgtgcaactcctgccagtggtaacggctttacttgc
atgtgtgctacagactggactggagagagatgtgaaataagtactgtcacgtgcaacgat
gatccatgtttgaacggcgccacgtgtgcaactcctgccagtggtaacggctttacttgc
acatgtactgcagactggacaggagatagatgcgaaataagcactgtcacgtgcaacgat
gatccatgtttgaacggcgccacgtgtgcaactcctgccagtggtaacggctttacttgc
atgtgtgctacagactggactggagagagatgtgaaataagtactatcacgtgcaatgat
aacccatgtttgaacggcgccacgtgtgcaactcctgccagtggtaacggctttacttgc
atgtgtgctacagactggactggagagagatgtgaaataagtactgtcacgtgcaacgat
gatccatgtttgaacggcgccacgtgtgcaactcctgccagtggtaacggctttacttgc
atgtgtgctacagactggactggagagagatgtgaaataagtactctcacgtgcgacgac
aatccttgtcttaatggagcaacttgtactgcttctaacactggtatcacatgtaactgt
gtagatggatgggaaggagattattgtgacacgactgagtcttactgtcttctgaacccg
ggaatttgtcagaacaacggagtatgtagcgataatgatttcagcagatttacctgtgat
tgtgagggaactggctacacaggacctcagtgcattatcaaagttaccacgtgtgcggat
aatccttgccagaacggcgccacctgcaatccacccatcaacagtgaaggatactcttgc
acatgcgcagtgggctggttaggtgtcaactgcgagacaagaaattggtgtgatcccgag
ccatgtcaaaatgggggcgtatgtagctttaatgctgaaaatacaaactttgtctgcgat
tgcggtgacgaatatctggatgacatctgcacagttataaatcattgcctttcggaaccg
tgtcaaaataacgcaccatgcacgaacaacgccgacaatactggctttgtgtgtgattgt
ggagaggattttttgagtgacacctgcgaagttatcaatcattgcgccgatgatccttgt
cagaatggtcgcccgtgttctaacactgatgataactcgggattcgtctgcgactgtggc
agagcttttgtaggagataattgtgaatatggcaatttctgtatcaactttccatgtaag
aatggtgcaacttgctcaaacaatgcaaataatgatgacttcgtgtgtacatgtgacgaa
aactcaggatttacagggcctacttgtgaagaccctataatcccacctgcatgtgactct
aatccgtgtgcgaatggtgctggatgcagtgaagagaatgatggctttgtttgtcaatgc
accaacggctggatgggaacaacctgtgagacacaagatttctgcgtcgatactccatgc
cagaatggtagaccgtgtagcaataacgacgatgatactggtttcgaatgttcttgtggt
aaccgctatgtaggagacagatgcgaattcacaaacttttgccgtggtaatccgtgccag
aatggtcgaccgtgtgacaataacgagaataacgacggtttcctttgtttttgcggcgat
gaatacctgggggacacttgtgacgtaataaatttttgtgagggagaaccgtgtgataat
gggcgtccgtgttcaaacaacgtggacaatacagattttgtttgcgattgtggagatgaa
tatttgggaattgtgtgtgacataaggaatttttgtcaaaatgacccgtgtcaaaacgcg
agaccatgttcaaacaacaacgataatactggcttcgtgtgtaattgtggagatgacttc
attggggatacttgtgaattcacaaactattgcagtggtgacccatgcgataataatcaa
ccctgtaccaataatgatgacaacacggggttcgtttgtaactgtgaagatgatttcatc
ggcgatacgtgccaacatacaaacttctgcctgggcgatccgtgccgtaatggagtccca
tgtacaaacaatcaagccaataacaacttcagatgtgactgtggtgaggagtatctgggg
tttagatgccaatggacaaatttttgttttggtgatccttgcgagaacgaaaggccgtgt
tccaacaacgatgacaactcggattttgaatgtgattgtggcaacgattttattgggaaa
atgtgtgaatttccaagttctactacagatttttgtgtggacgacccctgccagaatgaa
cgaccgtgttcaaacaatgaagatgaggatggctttgtgtgtgactgtggtgatgattac
attggaaacacatgtgaattcaccaatttttgcaaagatgatccgtgtgaaaatcagcga
acctgcttaaacaacgacgataataccgatttccaatgcgactgtggagatgaattcatt
gggaacaattgcgagtttaccaatcactgccgctctgctccatgtatgaatgaaggattg
tgctccaacaacaatgataattccgactatgtgtgtaattgccgtgacacaggatttaca
ggccccacatgtgaagatatagatatgtccactgaatctcccattgactgttctggtcct
tctccatgtcagaatgaggccgtatgtatcctcgatacatgtgtatgtcaaataggctac
agtggaatctactgcgaaatagctccgacggaacctcccgttgaaggctgtggaggccct
ctcccgtgtgagaatggcgccaggtgcctctctgatctttgtgtctgtcaagcaggtttc
accggaaccttgtgcgaaaccaacatagatgactgtgcttctgaaccatgcccttcacaa
acatcaacatgtgtggacttaatagatggctttgcctgctcgtgtattaacggatttaca
ggagaattatgtaatatagctgataacagaattcaagacactcggaaccaatctaatctg
ctgatcgatccttggtggatcgctctaatctgcctgatcgcagtcatggtcctcattgtt
attggtctatctatatgcacttgtcgaaccgtgaaggctgctaagaccaaatcagacatc
aatccgtag
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