Lytechinus variegatus (green sea urchin): 121408387
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Entry
121408387 CDS
T11173
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121408387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121408387
Enzymes [BR:
lvg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
121408387
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121408387
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121408387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
121408387
NCBI-ProteinID:
XP_041455788
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All DBs
Position
1:19355862..19388698
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AA seq
393 aa
AA seq
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MEPNNKVLPPNLRREWLFSPACCHGDESNEFTLMNYNILADCHFKEDWYPYCPQGFRKMS
ERHQALLQEIKHHDPDIVCLQEVGPDYFADQLNPEMYSLGYHGVYMKKVRGVMEGEATFY
KKNRFEMTDQKGVVYNELAAKACEKANLSNDAQESVLSYIERDHLVLFTKLQDIKTKKTV
CIGNTHLLFDDYKNIDVITLQASLAINAMIDFAGGVDQAHILCGDFNQEPHMTGYQLMHD
GKLDTDGEQFIHQYPIKIGNERQSLLDVLPLCFKHNSVGLKSAYKTVAGEEIPFSDVDDY
LGVEWSDVIKDPAEIIEPPPPKRPRKAFRTDPAKYGEKKYIAPLDYQWFDSHSLSCYGVL
EMVDEREIFPLYACPNKYFPSDHLSVMSRYKFI
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggaacccaacaataaagttctgccacctaacttgcgaagggaatggctgttctcacca
gcatgttgtcatggagatgagagtaatgaatttactcttatgaactataacatcctcgct
gattgtcatttcaaagaggactggtatccatactgccctcaggggttccgtaagatgtca
gaaagacaccaagccttattacaagagataaaacatcatgatccagacattgtttgttta
caagaggttggaccagattattttgctgatcagctcaatcctgagatgtattctcttggt
taccatggtgtttatatgaagaaagtaagaggtgtaatggaaggagaggcaacattctac
aagaaaaatagatttgaaatgactgatcagaagggagtggtttataatgagctagcagca
aaggcatgtgaaaaggctaacctttccaacgatgcccaggagagtgtattgtcttacatt
gaacgggatcatctggttctttttacaaagctacaagatataaaaacaaagaaaacagtc
tgcattggaaatacacatcttctgtttgatgactataagaacattgatgttataacgtta
caggcaagtttagctatcaacgccatgatagattttgctgggggtgtagaccaagcccat
atactatgtggagatttcaaccaggaacctcatatgactggatatcagctgatgcatgat
gggaaactggatactgatggagagcaatttatccatcaatacccaatcaagattggaaat
gaaagacaaagtctacttgatgtcttacctctgtgtttcaagcataactcggttgggttg
aaaagtgcctacaaaacagttgctggagaagaaatacccttttcagacgtagatgattat
cttggggtggagtggtcagatgtgattaaagacccggcagagatcattgaacctcctcca
cctaaacgccctcgcaaggctttcagaacggaccctgcaaagtatggcgagaagaagtat
atagctcccttggattaccagtggtttgattctcatagtctgtcttgctatggtgtttta
gaaatggtggatgaaagagaaatttttccactttatgcctgtccaaataagtattttcct
tcagatcacttgtcagtcatgtccagatataaatttatttaa
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