Lytechinus variegatus (green sea urchin): 121408396
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Entry
121408396 CDS
T11173
Name
(RefSeq) Fanconi anemia group J protein homolog
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03440
Homologous recombination
lvg03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121408396
03460 Fanconi anemia pathway
121408396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lvg03400
]
121408396
Enzymes [BR:
lvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121408396
DNA repair and recombination proteins [BR:
lvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
121408396
FA (Fanconi anemia) pathway
Downstream FA components
121408396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
ARCH_RTEL1
HBB
Motif
Other DBs
NCBI-GeneID:
121408396
NCBI-ProteinID:
XP_041455802
LinkDB
All DBs
Position
2:complement(54944184..54992266)
Genome browser
AA seq
1414 aa
AA seq
DB search
MGTAKKTKRQKGVVFDDDFEDVVEQSPNPHTKAHWEMKLVTPQGRKAKAGANELSGSKND
TSPCSCSCHISKCQKMMEEEEKGMKKEGETPKPIKVPKIYFGTRTHKQIAQIIRELGRTA
YKSVRMSILGSREHTCVHPEVSKSKNKNEGCKELLDNKTGGTCKYFTNVHKMKQQWQIRD
YGLTEAWDIEDLVNLGRRVKACPYFSSRSLKDQAEVIFCPYNYLIDPMIRESMEIDLKGQ
VVILDEAHNIEDSAREAASLTVTTEQLQDAIDELDKLLSFKFREEHTRVIHSVGSSILRW
INDFSTTLRQNDFDRASRMWTGQEMVAALANMGISPGTLGTLEHHLAALMEDEDERGIKE
MGPTLGAATGSLFKALFVIFNFLFKDDMKFTKDYKVALLKTKAKNQFPNTNNRWIQRRRS
NQAVWTLSLNFWCLNPAVAFTDFGNSVRTIILTSGTLSPMSSFASELGVAFPIQLEANHV
IKSSQVWVGSLAFGPNGHSLNATYKNAETFAFQDDLGRVVLEVCKVIPYGVLCFVSSYSM
MNKVIERWTATGLYDQLQSLKSVMCEARGGDKSVFDEQLREYYETIKLCEEDGLENQRIT
GVLMFAVCRGKISEGMDFADNNARAVITVGIPYPNVRDAQVEAKRHYNDQYAASRGLLSG
GEWYEVQAYRALNQALGRCIRHKKDWGAILLIDERFSRNPKKYISGISKWVRGKVNHHSQ
ARDALTSLSEFANLRMQTSPDADTSVFDGSQPNSQTLSPVTPSASSLNTSNLSHTPFRFG
HQTSMPGTPECGQTSRMDNTNLPKQEKGMLFGRSNVGQLFIPMSKSAPTPTSNSTNDPSP
LQHHIGQQGSMGSSVARGNGQCQTIAEEDREEQTKGRKSRRERKPRGKRAQEKLDAAQKV
PPQQTLLTFSPAVASNANGGVSKQQLGMSLINKTNGAPNVVIMNSGTCQNAQAESTSFVS
VHSVQALPSVPIHSGGVIDLTSPVKSLSNVDEVQRTHIPTPKAKLKFDDEPLPKDKEEAT
KTSFTSFKNKLSRFAFTKDENDNGCQKEERNDKICCRFESSCGNVSNQETLVKGKVEEVQ
DDHRDQRTTCVPTSDEEEEHYDEDMRRKQREEDNGTPVLFDSEMGDSGSDALEKPIPFIP
QGTKAEPEESKKCSTEDISKPNEITNESNNHYAADRTVNTNEMKIERDCDRSSRRLSIKG
RRNLSRRKDQSEQNEAKEDVNGTTVQETKPHMLVRRSARTRRTPKKVIDSVEKSKFCKDD
IECVQCGIPLIRNLDGVACLMPEDVKNKYLSDVMATKDRGQRSSCRCAVKGVEGSIIMTD
ASNLVHCNSITAENKSGLRLNAFWSSEDACCYQPIVCSVCDDKRKQGPKLSSTPPVIGCS
VVAAAPNSSQVVGESYIYPEEVGCCTLLLSQKNK
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgggtactgctaagaagacaaagcgtcagaagggcgtggtctttgatgatgattttgag
gatgttgtagagcagtctcctaatcctcataccaaggctcactgggagatgaaattagtc
acacctcaaggtaggaaagctaaggcaggagccaatgaactatcgggatcaaagaatgac
acgtcaccatgctcctgttcctgtcatatctctaaatgccagaagatgatggaggaggag
gagaaaggtatgaagaaagaaggagaaacccccaaaccaataaaagtacctaagatctat
tttggtacaagaactcacaagcagattgctcagattatacgagagcttggtcggactgcg
tacaagtcagtgagaatgagtattttgggaagcagggagcatacatgtgtccatcctgaa
gtctctaagagtaagaacaagaatgaaggatgcaaggaacttcttgataacaaaacagga
gggacatgcaagtatttcactaacgtccacaagatgaaacagcagtggcagatccgtgac
tatggactcacagaggcttgggatatagaagatttagtcaatctgggaagacgggtcaag
gcatgtccatacttttcatccagatcactgaaggatcaagctgaggttatcttctgtcca
tacaactacctcatagatcctatgataagagaatcgatggagattgacctgaagggacag
gtggtcatcttggatgaagcgcataacattgaagattctgctcgggaagctgccagtctc
actgtcacaacagaacaacttcaagatgccatcgatgagcttgacaagctattatctttc
aagtttcgtgaagaacacaccagagttattcatagcgtgggttcaagtatcctgagatgg
atcaacgacttctccaccaccctacgacagaatgactttgatagagcctcaaggatgtgg
actggccaggagatggtagctgcgctggctaacatgggaatctcacccggaacactgggt
actctggagcatcatctggcagcccttatggaagatgaggatgagagagggatcaaagag
atgggtccgaccttgggcgcggctactgggtcactcttcaaagctctttttgtcatcttt
aacttcctcttcaaagatgatatgaagttcaccaaagattacaaggttgcactgctgaag
accaaagccaagaatcagttcccaaacacaaacaatagatggatccagagaagaagaagc
aaccaggctgtgtggacattgtcattgaacttctggtgcctgaacccagctgttgctttc
acagactttgggaattcagttcggacgatcatcctgacttcgggaaccctatcaccaatg
agttcctttgcctcagagcttggtgtggcttttcctatccagcttgaagcgaaccatgtc
attaaatcctcacaggtgtgggtaggctctttagcctttggtcccaatggacactccttg
aatgctacctacaaaaatgcagagacatttgcattccaagatgaccttggtcgtgtggtg
ttagaggtctgtaaggtgataccgtatggagttctgtgctttgtgtcttcgtacagtatg
atgaacaaagtgatagaaagatggacggcaacaggactgtacgaccagctccagtctttg
aagtcagtgatgtgtgaagcaagaggaggtgataaatcagtctttgatgaacaactaaga
gagtactatgaaaccatcaaactatgtgaagaagatggtttggagaaccagcgaatcaca
ggagtgttgatgtttgctgtgtgcaggggaaagatcagtgaaggcatggactttgctgac
aacaatgccagagcagttatcactgttggcattccatacccaaatgttcgcgatgcacag
gtcgaggctaaacgccattacaatgaccagtatgctgcctctagagggctcctatccggt
ggcgaatggtacgaggttcaggcatacagggctcttaaccaagccttgggcaggtgcatt
agacacaagaaagattggggagcaatcttgttgattgatgagcgttttagcaggaatcca
aagaaatacatttcaggtatttcaaagtgggtgcgaggcaaggtgaatcaccattctcag
gctcgagatgctctcacctctctttctgagtttgccaatctcaggatgcaaacttcacct
gatgcagacacatctgtttttgatggttcccagcccaattctcagaccttgagtccagtc
actccaagtgcctcttcattgaacactagcaatctttcccacacgccgttccgctttggc
catcaaaccagcatgcctggtactccagaatgtggtcaaaccagcaggatggataacact
aaccttcctaagcaggagaagggtatgctctttggtcggagcaatgtcggtcagctgttc
attcctatgtcaaaaagtgctccaacacctactagcaactctacgaatgacccttcacca
ttgcaacaccatataggtcagcaaggatccatgggttcctctgtagcaagaggcaatggg
caatgtcagaccattgcagaggaagacagggaagaacagacaaaggggaggaagtcaaga
agagagagaaaacctagagggaaaagagcccaagagaaacttgatgctgcccagaaagta
ccacctcagcagacactcctgacattttcaccagctgtagcatcaaatgcaaacggtggt
gtttccaaacagcagctaggtatgtccctcatcaacaagacaaacggtgcacccaatgtt
gtgatcatgaacagtggcacttgccaaaatgcccaagcagaatcaacaagttttgtttct
gtacactcagtgcaagctttaccaagcgtcccaatccacagtggtggggtcattgatctg
acatcacccgtgaagagtttgtcaaatgtagatgaagtgcaaagaactcacataccaact
ccaaaagcaaaacttaagtttgatgatgaaccactaccaaaagacaaggaggaagcaaca
aagacatctttcacatcatttaagaataaactttccaggtttgcctttaccaaagatgaa
aatgacaatgggtgccaaaaggaggaaaggaatgacaagatatgttgcaggtttgaaagt
tcttgtggaaacgtttctaaccaggaaacattagtcaaaggaaaagttgaagaagtacaa
gatgaccatagagatcaaagaactacttgtgtacctacaagtgatgaagaggaagaacac
tatgatgaggacatgaggagaaaacaacgggaggaagacaatggtactcctgtcctcttt
gattctgaaatgggagattctggaagtgatgcacttgagaaacctattcctttcatccct
caaggcaccaaggcagaacctgaagaatcaaagaagtgcagtactgaggacatctctaaa
cccaatgaaattacaaatgagagtaataatcactatgcagctgataggactgttaacaca
aatgaaatgaagattgagagagattgtgataggtcgtccaggaggttgtccatcaaggga
cgaaggaatctcagtcgtagaaaggatcagagtgagcagaatgaagccaaggaggatgta
aatggaactactgttcaagagactaaacctcacatgttagtgcgtcggtctgccaggaca
aggagaacacctaagaaagttattgattccgtcgagaaatcaaagttctgcaaagatgat
atagagtgtgtccagtgtggtataccattgattcgcaacttagatggtgtggcatgtcta
atgcctgaggatgtcaagaataagtacttatcagatgtcatggcaactaaagataggggt
cagaggtcatcttgtagatgcgcagtgaaaggagtggaaggatctataataatgactgat
gcaagcaatctggtgcattgtaattctatcactgcagagaataagtcaggattgcgattg
aatgccttttggagttcagaagatgcctgttgttatcaaccaatcgtatgctctgtttgt
gatgacaagagaaagcaaggtcctaaactctctagtacaccacctgtgattggctgctct
gtggtggcagccgcgccaaattcatcacaagtggtaggagaatcatacatttatcctgag
gaggttggttgttgcactctactactgtcacaaaagaacaaatga
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