Lytechinus variegatus (green sea urchin): 121408492
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Entry
121408492 CDS
T11173
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03040
Spliceosome
lvg04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121408492
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121408492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lvg03041
]
121408492
04121 Ubiquitin system [BR:
lvg04121
]
121408492
03400 DNA repair and recombination proteins [BR:
lvg03400
]
121408492
Enzymes [BR:
lvg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121408492
Spliceosome [BR:
lvg03041
]
Complex B
Other components
Prp19 complex
121408492
Complex C
Prp19-CDC5 complex
121408492
Ubiquitin system [BR:
lvg04121
]
Ubiquitin ligases (E3)
U-box type E3
121408492
DNA repair and recombination proteins [BR:
lvg03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
121408492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
Prp19
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_Aladin
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_EIPR1
U-box
Beta-prop_WDR41
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_SCAP
Beta-prop_HPS5
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_VPS8
Beta-prop_WDR35_TULP_N
PROPPIN
PAS_11
Beta-prop_IFT140_2nd
zf-Nse
Motif
Other DBs
NCBI-GeneID:
121408492
NCBI-ProteinID:
XP_041455908
LinkDB
All DBs
Position
2:58827703..58860621
Genome browser
AA seq
507 aa
AA seq
DB search
MALVCSISNEVPEVPVVSPASGRVFEKRLIEKFISENGTDPVNGEPLSEDQLIEVKVNPL
VKPRPPTATSIPAILKLLQDEWDACMLHSFTLRQQLQTARQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAAPGIVPGAAMPAAVAVQPVPEPMEAAEAGPVGMTEDIIQKLQ
ERANVLTAERKKRGKKVPDELAPSEDIRNYRPRASHPGLHSASIPGILALDLQAADTSKV
LTGGADRNAVVFNKDTEQVTAILKGHTKKVNNVIYHPTEDVVFTSSPDATIRIWLTQNAS
CTQVVRAHDAAVTGLSLHATGDFLLSCSEDRHWAFSDIATGRVLTKVSDDSVGHALTCAQ
FHPDGLIFGTGTADSVIKIWDLKECTNVANFPGHSGPVTALAFSENGYYLATAADDAIVK
LWDLRKLKNFKNITLDDNYEIKSLTFDQSGSYLAVAGTDLRVFLCKQWQELAVFTDHTST
TTGVRFGQHSSFLASSSMDRSLKFYSL
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggcgttagtttgttcaatctctaatgaggtgcctgaggttcctgttgtatcaccagcg
tcaggtcgagtctttgagaaaagactgattgagaagttcatctccgagaatggcactgat
cctgtcaatggagaacctctttctgaagatcagctgatcgaggtcaaagtgaatccattg
gtgaaacctagacctcctacagcaaccagtatccctgcgatcctcaaactcctccaggat
gaatgggatgcttgcatgttgcacagctttacactccgccagcagcttcagacggctcgt
caggagttgtctcacgccctctatcagcacgatgcagcctgccgtgtcattgccaggctc
accaaagaggttacagctgctcgtgaagctttggctactctgaagccccaggcagcccca
ggaatcgtaccaggtgctgccatgcctgctgctgtggctgttcaacctgtacctgaaccc
atggaagctgctgaagctggcccagtcggcatgactgaagacatcatacagaagttgcaa
gagcgagccaacgttctcaccgctgagcgtaagaagcgaggcaagaaggttccagatgag
ctggctccatctgaggacatcaggaactacagaccgagagcttctcatcctggtctacac
agtgccagtattcctggtattctggcgcttgatttacaggcggctgatacctccaaggtt
ctcactggaggagccgatagaaatgctgtggtattcaacaaggatacggagcaagtgacg
gccatcttgaaaggtcatactaagaaggtcaacaatgtcatctaccatcctacagaggat
gttgtcttcacctcttcgcctgatgctaccatccgtatatggcttacccagaatgcatct
tgcacccaggttgtacgcgctcacgatgccgctgtgaccggtctcagtctccatgccact
ggagacttcctactcagctgttccgaggatcgtcactgggcattctctgacatagcaaca
ggacgtgtcctcaccaaagtctctgatgattctgtcggccatgctctgacctgtgctcag
ttccatcccgacggtcttatctttgggactggaaccgctgacagcgtcatcaagatctgg
gatctcaaagaatgcaccaacgttgccaacttccctggtcattccggtcccgtcaccgct
ctggccttctcagaaaacggttactacctggctacggcagccgatgacgccattgtcaaa
ctctgggatttgcgtaagctcaagaacttcaagaacatcaccctggatgacaactacgag
atcaaatcattgacctttgaccagagcggttcctacctagccgtagcaggcactgatcta
cgagtgttcctctgtaaacaatggcaggagctagccgtctttacagatcacaccagcacg
actactggagtacgctttgggcagcactcttcattcttagcatcatccagtatggatagg
agtctcaagttctacagcctataa
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integrated database retrieval system
