Lytechinus variegatus (green sea urchin): 121408579
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Entry
121408579 CDS
T11173
Name
(RefSeq) slit homolog 1 protein-like
KO
K05401
toll-like receptor 3
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
121408579
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lvg04054
]
121408579
04090 CD molecules [BR:
lvg04090
]
121408579
Pattern recognition receptors [BR:
lvg04054
]
Membrane-bound pattern recognition receptors
Toll-like receptors
121408579
CD molecules [BR:
lvg04090
]
Proteins
121408579
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
TIR
TIR_2
LRR_9
Motif
Other DBs
NCBI-GeneID:
121408579
NCBI-ProteinID:
XP_041456026
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Position
2:62622543..62625421
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AA seq
888 aa
AA seq
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MASSSIMYSIFLYLLVNLTVQYASGQEKHLPMRSSTVQEDEKSHVCDQDIKLKKASCRSK
DLDTVPQNLSRDIEILDLGMNNITRLFNVSFEIYPLISDLDISSNNLRFIEPAVFYPLKG
LVYLDLAFNPWLVLPGTGVFMMSSQLSILELAESNLKSLPNDTLKWSSHLSFVDMSFNQL
SFVNISSCGVADLVTLSNNQIQHLTERYFTFVCVSVTLNLKANPIKSVDPDVIASLHVSS
LELGSYPLSNEVLANITLGISKSNITKLSILKGSVGVFPTCLFLPLRDSSLAVLDLSRNN
LNNLHPLVFSNLTKLVELRISENNLPIPEIQPDFFKGMDDLKVMDIPANQIRQINPYNQS
WSIYLSELYLANNLITEISAFSFRGLGNLTILDMSSNEYLSVFELTDISGLKNIQRITLT
ESRITVLELHTPTLKSLSMNSVAPLLLLRPGKSFEHLQSLVNLNMRDSGMAQSDLWNVTT
NTSLFNRLLNLGHLDLSRNILLSVGELPPGIFLPLSTLKELSLDYCFITILHPLVFSGLE
SLQKLSLKGNHIQSLHADVLSFLELIESINFDNNRITSLEDVTFHNNGKLKSLSLAENRL
TSLNRSTFKPVFSSVTSLDLSKNLMNCNCDLKWLIDWIKFNEHVHLLNKDATICSMASLV
SLRQKTLLDFDPDKLCGIKIGLISCISLAVLASIIITLLVCRNRWQLKYRIFLLKLAVLG
YKEMHDARDHNDYEFDINIIFFDGDEEWIREHLRPALELHLPRYQRNVFGDEDLVLGMHY
LDSVDYVVTHSYKTIIVLSRAAVREHWFILKFRTAMDHVSDTLTEFVLVVFLEDIPDDEM
PFLVRLYLSDGRPYIHWTEDVRGQEVFWNELSANLTVNLRMNDLIPNE
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcagttccatcatgtattccatctttctttatcttctggtcaatttgaccgtc
caatatgccagtggacaggagaaacatttaccgatgagatcatcaacagttcaggaggac
gaaaaaagtcacgtttgcgaccaggacataaaactgaaaaaagcttcttgtaggagcaaa
gacctggacacagttcctcaaaatctttctcgagacatcgagattcttgatttaggaatg
aataatatcaccaggctctttaatgtctcgtttgaaatatatcctcttatcagtgacttg
gacatttcttctaacaatctaagattcatagaacccgccgtattttaccctctcaagggg
ttagtctacctggatctagctttcaacccttggcttgtgcttccaggaacgggagttttc
atgatgtcttcacagctttccattctagaattagcggaatcaaacttgaaatcacttcca
aatgacaccctaaaatggagttcccatctgtcttttgtagatatgtcattcaaccagctg
tcctttgtaaacataagttcttgtggagtagcagatttggtcaccctgagtaataatcaa
atacaacacctaacagagagatatttcactttcgtgtgtgtttctgtaactttaaatcta
aaggcaaatccaatcaaaagtgttgaccctgatgttatcgcatctttacatgttagctct
ttggaactaggtagttaccctctaagtaacgaagtattagcaaacattacccttggaatc
tccaaatcaaacattacaaaactgtcaattctaaagggatctgttggcgtgtttccgacg
tgcttattccttccactgcgcgattcctcgcttgctgttcttgacttaagtagaaataac
cttaataaccttcatcctttagtcttctccaacttgacaaaactagtggaattgaggatt
tctgaaaataatcttcctatacctgaaattcaaccagatttcttcaagggcatggatgat
ttgaaggtaatggatataccagcaaaccaaatacgtcaaataaatccctacaatcagagt
tggtcaatatacctatcagagctttacctagccaataatctcattacagaaatatcggca
ttttcatttcgtggtttggggaatttaaccattctagacatgagctcaaacgaatatctt
tcagtcttcgaactgacggatatttctggacttaaaaatatccaaagaatcacattaacc
gaaagccgtatcaccgttctagaactgcacactccaacacttaaatcactttccatgaac
tctgttgctcccctgttactactgcggccagggaaatcctttgaacatttgcaatccctt
gttaacttaaacatgagagattctgggatggcccagtcggacctttggaatgtaacgacg
aacacgtcacttttcaacagattattgaatcttggacatttggatttgagtaggaacata
ttattgtcagtcggggaactaccacccgggatcttcctaccactctctactttaaaagag
ctaagcctggactactgcttcatcacaatcctacatcctctagtcttttcaggattagag
tcgcttcagaagttgagtttaaaaggaaaccatatccagagtcttcatgctgatgtactc
tcgttcttggaactgatagaaagtattaacttcgataataatcgtatcacgagtttggag
gatgtaacattccacaataacggaaaactgaaaagtctttcattggctgaaaacagacta
acaagtctcaaccgaagcacttttaagccggtattctcatctgttacatcacttgatcta
tcaaagaacttgatgaattgtaactgtgatctaaagtggctaatcgattggatcaaattc
aatgaacacgtgcatttgttaaacaaggacgcaaccatatgttcgatggcatctcttgtg
tctcttcgtcagaaaactctgcttgactttgacccagataagctttgtggaattaaaatt
ggcctgatttcgtgtatttccttggcagtccttgcttccattatcatcaccctcttggtt
tgtcgcaacagatggcagttgaagtacagaatctttcttttaaaattggctgtgcttgga
tacaaagaaatgcatgatgctcgagaccacaatgactacgagtttgacattaacatcatc
ttcttcgatggcgacgaagaatggattcgcgaacatctccgacctgcacttgaattacac
cttcctcggtatcagagaaacgtctttggtgacgaagacctcgtcctaggcatgcattac
ttggattccgttgattacgtagtgacccatagttacaagaccatcatcgtgctaagcaga
gctgctgtgcgagaacattggttcatactcaagttccgtacggccatggatcacgtgagt
gatacgctcacggaattcgtgttggtggtttttctagaggatatcccagatgatgaaatg
cccttcttagtgagattgtatctcagtgacggtagaccttacattcactggactgaagac
gtgaggggacaagaagttttctggaacgaattgtcagcaaatctgactgtcaatttgagg
atgaatgatctgatcccgaatgagtaa
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