Lytechinus variegatus (green sea urchin): 121408907
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Entry
121408907 CDS
T11173
Name
(RefSeq) transcription elongation factor SPT6-like isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
lvg Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lvg03021
]
121408907
03036 Chromosome and associated proteins [BR:
lvg03036
]
121408907
Transcription machinery [BR:
lvg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
121408907
Chromosome and associated proteins [BR:
lvg03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
121408907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
SPT6_acidic
S1
HHH_3
Tex_YqgF
HHH_9
Spt6_S1
SH2
S1_RRP5
Tex_N
Motif
Other DBs
NCBI-GeneID:
121408907
NCBI-ProteinID:
XP_041456553
LinkDB
All DBs
Position
2:72002483..72036363
Genome browser
AA seq
1894 aa
AA seq
DB search
MADFFEEEAEVSDEDAPASSDEEEEEYEEDIDEGANVPDLINDDEEVENDSEGEEIGRKK
KRKHRADYDERLEDEDYDLIEENLGVKVERKKFRRVRQISEEDDSGSEDGGAGTSRELDD
RDAIAKEIFAGEEEEGELSPGEAEDLEEQHEVDQGEQYGALEESDEESDPDDFIVDDSGQ
PIGKKKKKGHKHRYTDSALQEAQDIFGLDFDFDEFEGYGDDYEEAEEEEYSEYEDEEEEL
EEGGEQRRRQKRPGKKRAPKKSIYEVFEPSELERGHFTDLDNEIKTADIPERFMLRTVPV
TEAADEELEKEAEWIYKQAFLTPSVSNQEFGDQGDGYGGSSGYERKPPKTKKKIREALLF
MRNQHFEVPFIAFYRKEYVEPELNFNDLYKVYHWDAKWCQLKARKANLLKLFEKMQTYQF
DTVMKDKDFDAELPEDFRALSNQDIERLNAVDSTESLKDVYMHFLLYYGRELPKMHNSLK
AKPKEKKMKMVTVKRKVMVKRWRKKKKEKSPHKERRIEDDDSDEEEDSNKKMDTMEEKEK
EDEEKMDTEDGEKGDEEGGEEKKKKDEEEDDGFEDGETKDKEEGEEGEEGETKEKDKEDG
EVAEEEEMEEIEVETEVEEEMEVEASDDEDDEEGVVTSYEIKQASRKSMYALCQDAKLTG
LAAKFGLTPEQFGENLRDNYQRHDPEQHQASPLEAASEYLSNKFKDEEGVLKAARYMVAL
QIAHDPLVRQCVRQTYYERAKISVKPTKKGIKEIDESHPIFGSKYLKNKQVKDLLGDQYL
KLVQAEKDKLITMTMSIDMAQASSTSYTSATYFEEMKQLYYLDEFRSEVQAWNKERSGAL
EMALKSILYPQLAKELKTKLIAEAKEGIIKQCCTKMFNYLKVMPLQVDQPMEEDEDDYLD
GNSRMGLRVMGFAFTSAMDSAAFCCMLDGEGEVTDFLRLPHFLRRRNAFWQRDRDLKEAD
VESLKTFISNQKPHVIAVASEGRNTTSVLQDIRGCIEDLESEQQMAPIKVQLLDSNVAVV
YQASKLVETEFRDYPPLLRQAVSIARRLQDPLIEFSRLCNPDDDLLCLKLHPQQEAVSQD
ELKEALHQEFIYRVNEVGVDINRAILHPHTASLVQFICGLGPRKGNALVRTLKQKNQRLD
NRNQLVTHCQLGPKVFINCAGFLKIDTASAGDGADDTYIEVLDSTRIHPETYEWARKMAV
DALEYDEAADDANPAEALEEILENPDKLKDLDLDAFAEELERQGYGNRSITLYDIRAELN
SRYKDLRTPFHPFTPEEAFSTLTKETPETFYRGKMVTCVVTGIARRRPTREMLDDANPSK
NDETGLWLCPFCQQDNFFELNEVWSHFDTGNCPGQAVGVKVRLDNGIMGFIHTKFLSDSK
VKNPEDRVKIGMTLHARIMKIDIERFQVDLTSRSSDLQDRNGEWAPPRDTYYDYEAAEMD
KQKDEDEKKKAAASSTYVKRVIVHPSFQNITYKQAEKVMRESDVGDVIIRPSSKGADHLT
VTWKVDDGIYQHIDVQEEGKDNDFSLGSTLKIGEEGFEDLDEIIARHIQPMAAFVRDVTS
HKYYRDVEGGSKELMDKCLAAEKKKAPSRIPYFMCFCKDYPGKFLLSYQPRSKGRHEYVT
ITPDGYKFRGQMFTTINSLHRWFKVHFRDPIPGMNVTPTPMSTHRTPMSVAHDGTPWQTG
TPMIQKTGTTFTGGMYATPSVLQGTPRQTPGRQTPLTGTAAGRYGYGYPYTTPQNITTPV
GATPSYQGMRTPQGGVARTPQVNRTPQINPARTPSVAGMTPQGTPQYQSRTTPRQSWGGS
TPTQQPQQAPHRSAGRTPQRSSGSSSSREMPRTGGPVDWAQQAALWAKQRQQNLRSPAVQ
PSPALHEPSPMSISNTPAPSQGGGDSTPLIDEEI
NT seq
5685 nt
NT seq
+upstream
nt +downstream
nt
atggcagatttctttgaggaagaagcagaagtatcagatgaagatgctccagcaagcagt
gatgaggaagaggaagaatatgaagaagatattgatgaaggggctaatgttcctgatctg
atcaacgatgatgaagaagtagaaaatgattctgagggagaagagattggtagaaagaaa
aaaagaaaacacagagcagattatgatgaaaggctggaagatgaagattatgatctgatt
gaagagaacttgggagtcaaagttgagaggaaaaagtttcgtagagtgcgtcagatctct
gaggaggatgatagtggaagtgaggatggaggagcaggaacatcaagggagttagatgac
agagatgctatcgccaaggaaatctttgctggcgaggaagaagagggcgaacttagtcct
ggagaagctgaggatctggaggaacagcacgaagtggaccaaggggagcagtatggagcc
cttgaagagtctgacgaagaatcagacccagatgatttcattgttgatgatagtgggcaa
cctattggaaagaaaaagaagaaaggacataaacacagatacacagactctgctctacaa
gaagcacaggatatctttggacttgattttgactttgatgaatttgaaggatacggtgat
gattatgaagaagcagaagaggaggaatattctgagtacgaggatgaggaagaggaatta
gaagaaggtggagaacagaggagaagacagaagagacctggcaagaaacgagctccaaag
aagagtatttacgaggtatttgagccaagtgagttggagaggggtcatttcacagatctt
gataatgagatcaagacagcagacattccagagagatttatgttgagaacggttcctgtg
actgaggcagctgatgaagagcttgagaaagaagctgaatggatctacaaacaagccttc
ctaacaccatcagtatcaaatcaggaatttggtgatcaaggtgatggttatggtggatca
agtggttatgaaaggaaacctccaaaaacaaagaagaaaatcagagaagccctcctgttt
atgaggaatcaacactttgaggtaccatttatagctttctacaggaaggaatatgtagag
ccagagctgaatttcaatgatctctataaggtctatcattgggatgcaaagtggtgtcaa
ttgaaagcaaggaaagccaatctcttgaagctctttgagaagatgcagacttaccagttt
gatacagtaatgaaagataaagactttgatgcagaactccctgaagatttcagagctctt
tccaaccaagatattgaaaggctgaatgctgttgattctacagaaagcttgaaggacgtc
tacatgcacttcttgttatactatggccgagagctccctaagatgcacaattcacttaaa
gccaaacccaaagagaagaaaatgaagatggtgacggtcaagaggaaagtgatggtcaaa
cgatggaggaagaaaaagaaggaaaaatccccgcacaaagaacgaaggatagaagatgat
gatagtgatgaggaggaggatagtaacaagaagatggatacaatggaggagaaggagaaa
gaggatgaggagaagatggacacagaggacggggagaagggagatgaggaaggtggggag
gagaagaagaaaaaagatgaggaggaggatgatggtttcgaggatggtgagacaaaagat
aaggaagaaggggaggaaggagaagaaggagagacaaaggagaaggataaagaagatgga
gaggtcgctgaggaggaagaaatggaggagattgaggtggagacagaggtggaagaggag
atggaggtggaggcttccgatgatgaggatgatgaagaaggcgtggtgactagctatgag
atcaaacaagccagcaggaaatcaatgtatgctctctgtcaagatgctaaactcactggt
ctggctgccaagtttggattgactcctgaacagtttggtgagaacctgagagataattac
cagaggcatgaccctgaacaacaccaggctagtcccttagaggcagcatcagagtacctt
tcaaataaattcaaggatgaggaaggtgttctgaaggctgcaaggtacatggtagccctt
cagatagcacacgatcctctggtcagacagtgtgttagacagacatattatgagagagcc
aagatatcggtcaaacctaccaagaaggggatcaaggaaattgatgagagtcatcccatc
tttggaagcaagtacctgaagaataaacaggtgaaggatctattaggagaccaatacctg
aagctagtacaggcagagaaagacaaactcatcaccatgaccatgtctattgatatggca
caggcatcaagtacgtcctacacgtctgctacttactttgaggagatgaagcagttgtac
tacctagatgagttccgttctgaggtacaggcctggaacaaagaaaggagtggtgcccta
gagatggcccttaagagtatcctctaccctcaacttgccaaagaactcaaaacaaagctt
attgctgaagctaaagaaggcataatcaagcaatgctgcacaaagatgttcaattacctg
aaggtgatgccattacaagtagatcaacccatggaagaagatgaagatgattacttggat
ggaaacagtaggatgggactaagggttatgggatttgccttcacaagtgcaatggacagt
gcagcattctgctgtatgcttgacggcgagggagaagtgacagacttccttcgattgcct
cacttcttgagacgaaggaatgccttctggcagcgagatcgtgacctcaaggaagccgac
gtagaatcactgaagacattcatctcaaatcagaaacctcatgttatagctgtagcctcg
gaaggaaggaatacaacatctgtgttacaagacatcaggggatgcattgaggatctggag
tcggaacaacagatggcgccaatcaaagttcaattgctcgacagcaatgtggctgttgta
taccaggcttccaagctagttgagacggaattccgtgactacccaccattactacgtcag
gcagtatcaatagcgcgtaggttacaggatccgctgattgagttctctcgattatgtaat
ccagatgatgatctcctttgcttgaaacttcatcctcaacaggaagccgtgagccaagat
gaactgaaggaggctcttcaccaagagttcatctacagggtcaacgaggtgggcgtcgac
atcaacagagctatcttacatcctcacacagcctctctcgttcagtttatatgtggactt
ggtcccaggaaaggaaatgctttagtcaggaccctgaagcagaagaaccagcgtttagac
aatcgtaatcaactagtaacccactgtcagcttggtcctaaggtcttcatcaactgtgct
ggattcctcaagatagatactgcttcagctggtgatggtgctgacgatacatacattgaa
gtccttgatagcacccgtatccaccctgagacatatgagtgggccagaaagatggctgta
gatgccttagagtatgatgaagctgctgatgatgcaaaccctgcagaagcactggaagag
attctagagaatcctgataaactcaaggatctggatctggatgcctttgcagaggaactt
gaaagacagggatatggcaataggagtattacattgtatgatatcagagctgaactgaac
agccgttacaaggatcttaggacgcctttccatccgttcactcctgaagaagccttcagt
acactgacaaaggaaacaccagagacattctatagaggtaaaatggtaacatgtgtagtg
actggtattgcaaggaggagacccaccagggagatgttagatgatgctaatcctagtaag
aatgatgagacaggattatggctatgtccattctgtcaacaagataacttctttgaactc
aacgaggtatggagccatttcgacacaggtaactgcccaggtcaggcagtaggggtcaaa
gttcgtctggacaatggcatcatgggatttattcacaccaagttcctgagtgacagcaag
gtcaagaatcctgaagacagggtcaagattggtatgaccctccatgctcgcatcatgaag
attgacattgagaggttccaggtggatctgacaagcaggagctccgatctccaggatcgt
aacggagaatgggcaccacctcgtgatacttactacgactatgaagcagctgagatggat
aagcaaaaggatgaagatgagaagaagaaggctgcagcatccagcacatatgtgaagagg
gttatcgtgcatccatccttccaaaatatcacctataaacaagctgagaaagtgatgaga
gagtcggatgtaggcgatgtcatcataagaccaagtagtaagggagctgatcatttgacg
gtgacatggaaagtagatgatggtatctatcagcatattgatgtacaagaagaagggaaa
gataatgatttcagtctgggatcaacattaaagattggagaagagggatttgaggacttg
gatgaaatcatagcccgtcacatccagccgatggcagccttcgtacgagacgtcacctct
cataaatactaccgggacgtagaagggggtagcaaggaactcatggacaagtgtctcgct
gctgaaaagaagaaggcaccaagtcgtatcccatatttcatgtgtttctgtaaagactat
ccaggcaagttcctgttgtcataccagccacgaagcaaaggaagacatgagtatgtcact
attacacctgatgggtataagttcagaggtcagatgttcacaacaatcaactctttacat
cgctggttcaaggttcattttagagatccaatacctggtatgaatgtgactccaacacca
atgagtactcacaggacacccatgtctgttgctcatgatggcacaccttggcaaacgggc
acacccatgatccaaaagaccggtaccacattcacagggggtatgtatgccacgcccagt
gtgcttcaaggtacccctcgacagactccaggccgtcagacacccttgactggtacagca
gcaggtcgctatgggtatggctacccctacactactccacagaatatcactacacctgtt
ggtgccactccttcgtaccagggaatgcgcacccctcagggaggtgtagcccgcacccca
caggtcaacaggaccccccagatcaaccccgcccgtaccccttctgtggctggcatgaca
ccccagggcacaccccagtaccaatcacgcaccactcctcgccagtcatggggtgggagt
actcctacacaacagccacaacaggctccacacaggagtgctggaagaacaccacagagg
agtagtggtagcagcagtagccgtgaaatgccacgtactggaggaccagtggactgggcc
cagcaagctgccctttgggccaaacaacgccaacagaacctgcgaagcccagccgtccaa
cctagcccagctctacatgaacctagcccaatgtccatctcaaacacccctgcacccagc
cagggaggcggagattcaacacccctcattgatgaagagatttga
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