Lytechinus variegatus (green sea urchin): 121409126
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Entry
121409126 CDS
T11173
Name
(RefSeq) small nuclear ribonucleoprotein Sm D3-like
KO
K11088
small nuclear ribonucleoprotein D3
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121409126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121409126
03041 Spliceosome [BR:
lvg03041
]
121409126
03032 DNA replication proteins [BR:
lvg03032
]
121409126
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
121409126
Spliceosome [BR:
lvg03041
]
Complex A
U1 snRNP components
Sm proteins
121409126
U2 snRNP components
121409126
Complex B
U1 snRNP components
121409126
U4/U6.U5 tri-snRNP components
121409126
Complex C
U2 snRNP components
121409126
DNA replication proteins [BR:
lvg03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
121409126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
121409126
NCBI-ProteinID:
XP_041456887
LinkDB
All DBs
Position
2:complement(77457630..77464445)
Genome browser
AA seq
133 aa
AA seq
DB search
MSIGVPIKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMMHITVTYRDGRVAQLEH
VYIRGSKIRFFILPDMLKNAPMFKKAGSKGSAGRGKSAILRAQVAAGGRGGRGRGGGRGD
GGRGRGNVFQRRR
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgtctatcggtgtacctatcaaggttttacatgaggcagagggacatatcatcacttgt
gaaacgaatacaggagaagtctaccgtggaaagctcatcgaagccgaagacaacatgaac
tgccaaatgatgcacataactgtcacttatcgcgacggacgagtcgcacagcttgagcat
gtttatatcaggggaagcaaaattagatttttcatcttgcctgatatgttgaagaatgct
cccatgtttaagaaagccggatctaagggatctgcagggcgaggaaagtctgcgattctg
agagcccaggttgctgccggaggtcgaggaggaagaggccgtggtggtggacgtggtgat
ggaggacgaggaagaggaaacgtcttccagaggaggagatga
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