Lytechinus variegatus (green sea urchin): 121409292
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Entry
121409292 CDS
T11173
Name
(RefSeq) replication factor C subunit 2-like
KO
K10755
replication factor C subunit 2/4
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03030
DNA replication
lvg03410
Base excision repair
lvg03420
Nucleotide excision repair
lvg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121409292
03410 Base excision repair
121409292
03420 Nucleotide excision repair
121409292
03430 Mismatch repair
121409292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lvg03032
]
121409292
03036 Chromosome and associated proteins [BR:
lvg03036
]
121409292
03400 DNA repair and recombination proteins [BR:
lvg03400
]
121409292
DNA replication proteins [BR:
lvg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121409292
DNA Replication Termination Factors
ELG1-RFC complex
121409292
Chromosome and associated proteins [BR:
lvg03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
121409292
DNA repair and recombination proteins [BR:
lvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121409292
Check point factors
HRAD17(Rad24)-RFC complex
121409292
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_lid_RFC1
RCF1-5-like_lid
nSTAND_NTPase5
AAA_22
AAA_16
Mg_chelatase
AAA_11
Viral_helicase1
AAA_14
Rad17
RuvB_N
nSTAND3
AAA_19
ABC_tran
AAA_25
Gp44_lid
AAA_5
AAA_24
AAA_assoc_2
AAA_30
AAA_18
AAA_28
AAA_RNF213_4
DNAX_ATPase_lid
SLFN-g3_helicase
MeaB
bpMoxR
NTPase_1
AAA_7
FtsK_SpoIIIE
MipZ
AMP-binding_C_3
AAA_3
MC4
Motif
Other DBs
NCBI-GeneID:
121409292
NCBI-ProteinID:
XP_041457138
LinkDB
All DBs
Position
2:complement(83164568..83181880)
Genome browser
AA seq
352 aa
AA seq
DB search
MDEVESSTSVDPKSKSGESGKSGGAGKSTSYEMPWVEKYRPTSLSDVVGNEETVSRLEVF
AREGNVPNVIIAGPPGTGKTTSILCLARTMLGSSFKDAVLEMNASNERGIDVVRNKIKMF
AQKKVTLPKGRHKIIILDEADSMTSAAQQAMRRTMEIFSKTTRFALACNASDKIIEPIQS
RCAVLRYSRLNDSQILKRLLEICAAENVDHAEDGLEAIIYTAQGDMRQAINNLQSTYAGF
GSITSENVFKVCDEPHPQLIKSMLDHCIEGDIDKAYEIMHHMSHMGYSADDIITNVFRSC
KTHQMAEYIKLEFIKEIGMTHMRIAEGVNSILQLSGLLARLCQKTATPSEKA
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagtagaatctagcacttctgtggatcctaaatccaagtcaggagaatctgga
aagtcggggggagctggaaaatcgacttcctatgagatgccttgggttgaaaaatatcgt
ccaacatccctctctgatgttgttggaaatgaagagactgtttcgagattagaagttttt
gccagagaagggaacgttccaaatgtcattattgctggacctcctggaaccggtaagact
accagtattctttgtttagctaggacaatgctgggatcatcattcaaagacgctgtatta
gaaatgaatgcatcaaatgaaagaggaattgatgttgtgaggaataagatcaagatgttt
gcacagaagaaagtcacattaccaaaaggaaggcataagatcatcatactagatgaagca
gacagtatgacaagtgcagctcagcaagctatgcgaagaacaatggaaatcttctctaag
acaacacgatttgcccttgcttgtaatgcctcagataagattatagaaccaattcagtca
agatgtgcagtactgaggtattcccgacttaacgactcacaaatattaaagcgattacta
gagatatgtgcagctgagaatgttgatcatgctgaggacggtttagaagctattatctac
acagcacagggtgatatgagacaggctatcaacaatttgcagtcaacttatgctggcttt
ggctcaatcactagtgaaaatgtcttcaaggtctgtgatgagccccaccctcaactaatc
aaatcaatgttagatcattgcatagagggcgacattgataaagcatatgaaataatgcat
catatgtctcacatgggctactctgctgatgatatcatcactaatgtcttcaggtcatgt
aagactcatcagatggctgaatatatcaaattagagtttattaaggaaattggaatgaca
cacatgaggattgcagagggagtgaactccattcttcaactctctggtctcttagcaagg
ctgtgccagaaaacagccaccccctctgaaaaagcttga
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