Lytechinus variegatus (green sea urchin): 121409727
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Entry
121409727 CDS
T11173
Name
(RefSeq) polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
lvg Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lvg04040
]
121409727
04091 Lectins [BR:
lvg04091
]
121409727
Ion channels [BR:
lvg04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121409727
Lectins [BR:
lvg04091
]
C-Type lectins
Others
121409727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
REJ
PKD_channel
Polycystin_dom
PLAT
GPS
Motif
Other DBs
NCBI-GeneID:
121409727
NCBI-ProteinID:
XP_041457569
LinkDB
All DBs
Position
2:29420849..29441641
Genome browser
AA seq
1925 aa
AA seq
DB search
MDASWSDAGRHGPSGCISNCNTYLLTAERLVLHASCSNCDSGDVSFQWSLQSDDSSIISD
ISTQTTTGLDQSYLVIKPHTFDSFSESTGIALQVTGYLSNSTSGGYSEFSVQLNAPPTLG
NCSVTPIEGYALQTDFTVTCQGFTDVDNPLTYEIMSYSDVKVADGDFIGVGEGFQLHEGS
ESSQDGFNLPVGDGAHDYTILFQVNVKDNFMASTSVFFTCMVRPPTIDTGGANMTQELLN
MTSSVESSVNTLLAVGDTGQATQLISALGSILNSIGDGDDDAAADDEGRDTRSEIRSTLV
DSIAAIPVESMTSLKQSSAALAVITQNKQEISTDVQVKAANALSEMTSFLKAESGSHTQG
QSTIESAGTVLVEGLSNIFSAAKETQTHISNKTSPVEAEDEATPNKNLTEVALSAINDIQ
DAIVAGKIPSEEATIITSPTLSLAVGSISKEKLAETTFGGSDDDDGIGRFEMPSQEGVLD
DTLSNVNGTVVSLQTSALRWNPFSWGAGSDSLNSSIIGIQLKVDNNALQVKDLSDDISVY
LPVEEPFIGDPMVVHITKEFSASISVNQSSLPEDGALHLRVLAENEPLVVLTVCITNITI
NETSCVGNATVVRATNEDSVVNFTWSISVADLKVADGIMISLYDGIDEPLYVHDNITLSV
FMHTSQCTFWNEDEESWDSTGCKVGPLSKPSSTHCLCNHLTFFGSALFVPPNKINIFQDA
KLFLTFVDNPIVVSFVMCILAGFVLVAVWARRKDKRDAARAAVTVLDDNDPFHHYRYDVT
IVTGMRRGSGTTATVTLTLMGKNGRSDPHVLHDRFSPVLTRGSTDSFLLTTAEGLGEIQS
LRLWHNNAGTSPHWYVSHCVVHDLESDERYYFICNSWMMIGGGGVGLDNTFHIASSKDLH
KFGHLFTARTVRDLRDGHLWLSVLMRPKHSNFTCLQRAFCCLSLLMCSMMTSIMFYGIPN
DPADQVMDFGTFRITIKEIIIGIESSLIAFPINLLIVQIFRHIRPSIKLRTAANKEKYMV
KLKPEIAHSLSSIELTKKEDSERESADDKLTLKSLTKSIQHKDREVSSQQSPERTSRHWV
GGGDSSSTSSKDNNPVNASSASSTTSLPSCISLNSTLFHQEMEDFVLRSVSAVMKEWGSD
KSSKRVEVFGHGGLEKVDRTRSETTDDTTTQSVKQIPNYVKEGIDTEENSRDYNSDLMGK
KCDGFTHNFYLYSRLMEMVKDLSVISSDRFYDPEEHKQAMREAQTIVMTALDIETPPISP
DESLLSDSVVEGKIKLKQRTRGLPHACVYIAWLLVFATVLASCYITMLYGLKYGKQTSID
WLISLFIATFQSIFITQPIKVLFLAIFVSLIFKQIEPEEDFSDDIEELQVDDATQTRRAL
QKRRNTIAHYHPPATSTINSHLKNKQLQARMYSLLWQIAGFLCFFYLLITITYSQRDRQA
YWMTRGTKGLFFHHKNKDYALMNDFRSFLTWANSTLLPGLLSEDRWGAEKQSTLIGGGLR
LRQIRVKPSSCKTYPLFVDLINDCRAPFTSDSADRELYNASWSQPIVNTSAFLNSSQTVE
EWSLSNYSPWHFYPDRSTGMWGHTMVLPNSGYIWVLGTNYEEAVNSLAEMVNARWLDART
RALFAEWTAYNANTNLFCVVTFLMETPASGGMLKLPEVQAVRLHRYAANYKLFVIICEIL
FVLALFFVMYREYLRYKPIGIRKYLSDKWNLLEIAIIVNCYVSAGLYTYRYIITKQLFQE
MRDESVRFVSFRSAASSDNALGYSFAVIIILSCVKFLYLLRLNPRMYLLTAVMSDCYHEV
TAFSFLLLVLVLSFAFPMSITFGSLPDYRDITKSAITLFNTLPGNFVYDDLMSVNRTIGP
LTLLIFQYWGFYLFLDLLIAALNESMVTIRRNPPPPSGNRMIGLLLLSKIFSLLGIPGRF
HIGLD
NT seq
5778 nt
NT seq
+upstream
nt +downstream
nt
atggatgcatcgtggtctgatgcaggcaggcacggacccagcggttgcatcagtaactgc
aacacatacttattaacagccgagcgtcttgtcctgcatgcctcatgcagcaactgtgac
agtggagatgtgtctttccaatggagtcttcaatcagatgatagctcaattataagtgat
atatctacccagactacgacaggtcttgaccaatcctacctggtcatcaaacctcatacc
tttgattccttttctgaaagcactggcattgctttacaagttacaggttacctgtccaat
tccacttcaggcggctattctgaattcagtgtccaactcaatgctccacccacattaggc
aactgttctgttacacccatagaaggttatgccttacaaactgacttcactgtgacatgt
caaggatttactgatgtggataaccccctaacttatgagattatgtcgtacagtgatgtc
aaagttgcggatggagacttcattggtgttggagaaggttttcaactacatgaaggcagt
gagtcatcacaggatggtttcaatctccccgttggagatggtgcacatgattatactatc
ctgtttcaggttaatgtgaaagacaacttcatggctagtacatcagtgttctttacatgt
atggtccgccctcctaccatagatactggaggggcaaacatgactcaggaactgctgaac
atgacatcgtctgttgaatccagtgtgaatacgttattagcagtgggagatacaggacaa
gctacgcagttgatcagtgcccttggttcaatcctgaattccattggagatggggatgat
gatgctgctgctgatgatgaagggagggataccagatcagagatccgctctactcttgtt
gactctattgctgctataccagtggagtccatgacatccctgaaacaaagttctgctgcc
ctcgctgtcattactcaaaacaagcaagaaatttctactgacgtacaggtaaaagccgca
aatgcactgtctgaaatgacatcctttctgaaagctgaatctgggtctcatactcaaggt
caaagtactatagagtctgctggtaccgttctggttgaggggttgtcgaatatcttcagt
gctgccaaggaaactcaaactcacatttctaacaaaacttctccagttgaagctgaagat
gaggcaacacccaataagaacctgaccgaagttgccctatcagcaatcaatgacatccaa
gatgcaatagttgcaggcaagattcccagtgaagaagcgaccatcataacatctcctaca
cttagcttagcagtggggagtatcagcaaggaaaagctggctgagacaacctttggaggt
tcagatgatgatgatggtattggtagatttgaaatgccatctcaagaaggtgtgttggat
gatactctaagcaacgttaatgggacagtggttagcttgcagacatcagctctgagatgg
aaccctttcagttggggagctggtagtgactccctgaactctagtatcattggaatacag
ttgaaagtggataacaatgcattacaagtcaaagacctgtctgatgacatcagtgtgtac
ctaccagtagaagaaccctttataggtgacccaatggttgtccatatcaccaaggagttc
tccgcatctatctctgtcaaccaatcatcgctcccagaggacggggccttacaccttaga
gtcttagctgagaatgaacccttagtagtccttacagtctgcattaccaatattactatc
aatgagaccagctgtgttggtaatgctactgtggtacgtgccaccaatgaggatagtgtt
gtgaattttacatggagcatctctgtagctgacctaaaagttgcagatggtataatgata
agtctgtatgatggtatagatgaacctctctatgtacatgacaacatcacactctctgtt
ttcatgcatacatcacaatgtactttttggaatgaagatgaagagtcatgggacagcaca
gggtgtaaggtcggtcctctctctaagccctcgtcaacccactgtctctgcaatcatctg
accttctttgggtcagcactctttgttccaccaaacaagatcaatatcttccaggatgct
aagttattcctgacctttgtggataaccccattgtggtcagctttgtgatgtgtattctg
gcaggctttgtcttagtggcggtatgggcaaggaggaaggataaacgagatgctgcaaga
gctgcagtcactgtgttggatgacaatgacccattccatcattaccgttatgatgtcacc
atagtcacagggatgcgccgtggttcaggcacaacagcaactgttacactaactctgatg
ggcaagaatggtcgcagcgatccacacgtcctgcatgacaggttctcacctgtcttgacc
agaggttcgacagattcgttcttgttgaccactgcagaaggtctcggagaaattcaatct
ttaaggctgtggcataacaatgctggcactagtcctcactggtatgtgagccattgcgta
gtccatgatctggagagtgacgagcgctactacttcatctgcaacagttggatgatgatt
ggaggtggaggggttggtcttgacaacaccttccatattgcatcatccaaagacttgcac
aagtttggacacctgttcactgccaggactgtacgtgatctgcgtgatggccatctgtgg
ttgtctgttctgatgcgtccaaagcacagtaacttcacctgtctgcagcgagcattctgt
tgcctgtcccttctcatgtgctctatgatgacaagcattatgttctacggaatcccaaat
gatccagccgatcaggtcatggactttggcacttttagaattaccatcaaagagatcatc
atcggcattgagagctctctaatcgccttcccaatcaatctcctcattgtgcagatcttc
agacacatcaggccaagtatcaaacttcgaacagctgctaacaaagaaaaatacatggta
aaactgaagcccgaaattgcccattcactttcaagtattgaattgaccaagaaggaagat
tcggaaagggagtctgctgatgataaattgacattaaaaagcctgacaaaatccatccaa
cataaagacagagaagtctcttcccaacaatcaccagaaaggacttctcgtcattgggtt
ggtggaggtgatagttcttccacatcttccaaagataacaaccctgtaaacgcctcatct
gcttcttctaccacttctctgccatcatgcatttctttgaatagtacgctattccaccag
gagatggaagactttgtccttcgatccgtctctgcagtcatgaaagaatggggaagtgac
aagagttcaaagcgtgtagaggtatttggacacggagggctagagaaagtcgatagaaca
cggagtgaaactactgacgacacaaccactcagtcagtcaaacaaatacctaattacgtg
aaagagggaatcgatactgaagaaaatagccgtgactacaattctgatctcatgggaaag
aaatgtgatggtttcacccataacttctacctgtactcacggttgatggaaatggtcaag
gatctatcagtcatatcttcagacaggttctatgaccctgaagaacacaaacaagctatg
agggaagcccagaccatcgtcatgacagcattggatattgagacacctcccatatcacct
gatgagtctctgctatcagattctgtggtagaaggaaagattaagctgaaacagagaacc
aggggtcttccacatgcatgcgtgtacattgcatggttgttggtgtttgcaaccgtgctc
gcttcttgttacatcacgatgctttatggcctcaaatatggcaaacaaacaagcatcgac
tggttgatctctctgtttatagctacctttcagagcatcttcatcacacagcccatcaag
gttctgttccttgccatctttgtttcacttatcttcaagcagattgaaccagaagaagac
ttcagtgatgacattgaggaactccaagtagatgatgctacacagactcgcagagcactt
cagaaacgaaggaacaccatcgcccattaccatcccccagctacctccaccataaactcc
cacctgaagaacaagcaattgcaggctcgcatgtattccctgctgtggcagattgctggt
ttcttatgtttcttctatctgctcatcactatcacatacagtcagagagataggcaggcg
tactggatgaccagaggtacaaagggactcttcttccatcacaagaataaagactatgca
ttgatgaatgacttccgtagtttcctgacgtgggctaactcaacactcctgcctggtctt
cttagtgaggatagatggggagccgagaagcaatccacgttgattggtgggggtctgaga
ctaaggcaaatcagggttaaaccaagttcctgtaaaacttaccctttgttcgtagatctg
atcaatgactgccgagccccttttacttcggattcagcggacagggaattatacaatgca
tcttggagtcagcccatagttaacacatctgccttcttgaactcatctcagacagtggaa
gagtggagtctttccaactactctccctggcacttctacccagacagatctacaggaatg
tggggccacacaatggtccttccaaacagtggctacatctgggtactgggcaccaactac
gaagaggctgtgaattccttggcagagatggtgaatgcccgatggttggatgcccgcacc
agagccctctttgcagagtggacagcatacaatgcaaacaccaatcttttctgtgtagtt
acattcctcatggagacccccgcatctggcggaatgctgaagcttcccgaggtacaagca
gttaggctgcatcgttacgctgcaaactataaactctttgtcatcatctgtgaaatcctc
tttgttttggccctcttctttgtcatgtatcgagagtacctcaggtacaagcccatcggt
atcaggaagtacctcagtgacaaatggaacttgttggaaattgccatcattgtcaactgc
tatgtatctgcaggattatacacctaccgctacattatcaccaagcagctcttccaggaa
atgagagacgaatcagttcgctttgtaagtttccgttctgcagctagcagtgacaatgct
ctaggatatagctttgcagttatcatcatccttagctgtgtcaagtttctttatctcttg
cgtctcaaccctcgcatgtatcttctcactgctgtcatgtctgactgctaccatgaggtc
actgcattcagctttctgctcttagtcctagtacttagctttgcctttcccatgtccatc
acctttggtagccttccggactatcgtgatatcaccaaatcagcaatcactctcttcaac
acacttccaggtaactttgtctatgatgacttgatgtccgttaatcgaacaattggtccg
cttactcttctgatattccagtactggggcttttatctatttttagatcttttgatagct
gccctcaatgaaagcatggtgaccatcaggagaaatcctcctccaccttcagggaacaga
atgataggtcttctgcttttgtcaaagatattctctttgctgggtatcccaggaaggttt
cacataggactggattag
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