Lytechinus variegatus (green sea urchin): 121409728
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Entry
121409728 CDS
T11173
Name
(RefSeq) polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
lvg Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lvg04040
]
121409728
04091 Lectins [BR:
lvg04091
]
121409728
Ion channels [BR:
lvg04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121409728
Lectins [BR:
lvg04091
]
C-Type lectins
Others
121409728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
REJ
Polycystin_dom
PKD_channel
PLAT
Lectin_C
SUEL_Lectin
GPS
DnaJ-like_C11_C
Phyto-Amp
Motif
Other DBs
NCBI-GeneID:
121409728
NCBI-ProteinID:
XP_041457570
LinkDB
All DBs
Position
2:29449675..29488654
Genome browser
AA seq
2679 aa
AA seq
DB search
MWNVAFSFFILLIVKVDVNIAGAGLFAIVLFLLNTETEIICENQDGVIDCGENLISISSS
VYGRTDASTCGLSYTTDCVLDVAPELAFCNGQSQCTVEAENDLSGDPCSGTRKYLNITYT
CEDSLCETDWVYNDGNCYLFEESGKSWDSAREYCSGFGADLASIHSEDENSFILGSIESH
SWIGITDVESEGVYTTFSDGTPIDFENFAANSHQDESRDCVKMKSPYGEWTWKGCLSSHH
SVCKKAHAVNSTLHPVTSQHATTTHLASTTVPPTATSATTTVHETSTIHARTTTASTTGK
ATTQPSTTISASSESAHVVPTIEPSFIIVELIMYSNYESSLDNIFQVNDTILVIASIFGP
FQPISAQIIWSITDHLSGESIEHTVYSQDAVLVTFPVSSLFAINAIAVGTTHNLTSTVNA
TVLPTINILCPAHIYAGIEVWCALVTDDIVEYSNYTFCFDGSACSTANPTYWSLADIPDP
LIDSTSSMEGLFASFQNHLYSDVRSYTVTAEIFQILAFSVQVDVIEKPECIRKLGFVNGK
GNSTHPAGFLRASDIGISANMKLDEECNDPMTSDFKWWIFTSDENDVAVIAFEKITHIPQ
VTIPQGTLPYGIHSLNLKVEMNHRTSGEVTGEEQIITWLEILPSPLVAVIKGGASRSHGI
SSSLIVDGSTSYDPDGSSGDLTFVWYCVMVDGETMYLSMDEAMQNTDDACFEDEEILENS
HSSKVEIMSSILKANVTLNFWLIISKEGRASGSTQQSILLTPGLLPEIEIDCISNCNTYL
LTAERLVLHASCSNCDSGDVSFQWSLQSDDSSIISDISTQTTTGLDQSYLVIKPHTFDSF
SESTGIALRVTGYLSNSTSGGYSEFSVQLNAPPTLGNCSVTPIEGYALQTDFTVTCQGFT
DVDNPLTYEIMSYSDVKVADGDFIGVGEGFQLYEGSESSQDGFNLPVGDGAHDYTILFQV
NVKDNFMASTSVFFTCMVRPPTIDTGGANMTQELLNMTSSVESSVNTLLAVGDTGQATQL
ISALGSILNSIGDGDDDAAADDEGRDTRSEIRSTLVDSIAAIPVESMTSLKQSSAALAVI
TQNKQEISTDVQVKAANALSEMTSFLKAESGSHTQGQSTIESAGTVLVEGLSNIFSAAKE
TQTHISNKTCPVEAEDEATPNKNLTEVALSAINDIQDAIVAGKIPSEEATIITSRTLSLA
VGSISKEKLAETTFGGSDDDDGIGRFEMPSQEGVLDHTLSNVNGTVVSLQTSALRWNPFS
WGAGGDSLNSSIIGIQLKVDNNALQVKDLSDDISVYLPVEEPFIGDPMVVHITKEFSASI
SVNQSSLPEDGALHLRVLAENEPLVVLTVCITNITINETSCVGNATVVRATNEDSVVNFT
WSISVADLKVADGIMISLYDGIDEPLYVHDNITLSVFMHTSQCTFWNEDEESWDSTGCKV
GPLSKPSSTHCLCNHLTFFGSSLFVPPNKINIFQDAKLFLTFVDNPIVVSFVMCILAGFV
LVAVWARRKDKRDAARAAVTVLDDNDPFHHYRYDVTIVTGMRRGSGTTATVTLTLMGKNG
RSDPHVLHDRFSPVLTRGSTDSFLLTTAEGLGEIQSLRLWHNNAGTSPHWYVSHCVVHDL
ESDERYYFICNSWMMIGGGGVGLDNTFHIASSKDLHKFGHLFTARTVRDLRDGHLWLSVL
MRPKHSNFTRLQRAFCCLSLLMCSMMTSIMFYGIPNDPADQVMDFGTFRITIKEIIIGIE
SSLISFPINLLIVQIFRHIRPSIKLRTAANKEKYMVKLKPEIAHSLSSIDLTKKEDSERE
SADDKLTLKSLTKSVQHKDREVSSQQSPERTSRHWVGGGDSSSTSSKDNNPLNASSASST
TSLPSCISLNSTLFHQEMDDFVLRSVSAVMKEWGSDKSSKRVEVFGHGGLEKVDRTRSET
TDDTTTQSVKQIPNCVKEGIEENSRDYDSDLMGKKCDGFTHNFYLYSRLMEMVKDLSVIS
SDRFYDPEEHKQAMREAQTIVMTALDIETPPISPDESLLSDSVVEGKIKLKQRTRGLPPA
CVYIAWLLVFATVVASSYITMLYGLKYGKQTSIDWLISLFIATFQSIFITQPIKVLFLAI
FVSLIFKQIEPEEDFSDDIEELQVDDATQTRRALQKRRNTIAHYHPPATSTINSHLKNKQ
LQARMYSLLWQIAGFLCFFYLLITITYSQRDRQAYWMTRGTKGLFFHHKNKDYALMNDFR
SFLTWANSTLLPGLLSEDRWGAEKQSTLIGGGLRLRQIRVKPSSCKTHPLFVDVINDCRA
PFTSDSADRELYNASWSQPIVNTSAFLNSSQTVEEWSLSNYSPWHFYPDRSTGMWGHTMV
LPNSGYIWVLGADYEEAVNSLAEMVNARWLDARTRALFAEWTAYNANTNLFCVVTFLMET
PASGGMLKLPEVQAVRLHRYAANYKLFVIICEILFVLALFFVMYREYLRYKPIGIRKYLS
DKWNLLEIAIIVNCYVSAGLYTYRYIITKQLFHKMRDESVRFVSFRSAASSDNALGYSFA
VIIILSCVKFLYLLRLNPRMYLLTAVMSDCYHEVTAFSFLLLVLVLSFAFPMSITFGSLP
HYRDITKSAITLFTTLPGNFVYDDLMSVHRTIGPLTLLIFQYWGCYLFLDLLIAALNESM
VTIRRNPPPPSGNRMIGLLLLSKIFSLLGIPERFHIGLD
NT seq
8040 nt
NT seq
+upstream
nt +downstream
nt
atgtggaatgttgctttcagtttcttcattttgctcatcgtgaaggtagacgtcaacatc
gctggcgcaggcttgtttgcgattgttttgtttttgttaaatacagagactgagattatt
tgtgagaaccaagatggagtaatagactgtggtgaaaatcttatcagtatctcatcctct
gtctatgggcgaactgatgcatccacttgtggcttgagttacacaactgattgtgtcttg
gatgtggcccctgaattggctttctgcaatggtcagtcacaatgcacagtggaagctgag
aatgatctttctggagatccatgctcaggaacacggaagtatctaaatatcacctacaca
tgtgaagattctctctgtgaaactgactgggtttataatgacggaaactgttatcttttt
gaggaaagtgggaaatcttgggattcagcaagagaatattgttctggatttggtgctgac
ttagccagcatacatagtgaagacgagaattcatttatacttggatccattgaaagtcat
tcatggataggaataactgatgtggaaagtgaaggagtatatactactttttcagatgga
acccccattgactttgaaaattttgcagctaacagccatcaagatgaaagccgtgattgt
gttaaaatgaaaagtccatacggagaatggacttggaaggggtgcttgagttcacatcat
tctgtgtgcaaaaaagcccatgctgtaaacagtactcttcatcctgtgacaagtcaacat
gccactaccactcatcttgcatctaccacagttcctcccactgccacatctgctaccact
actgtccatgaaacttctactattcatgcaaggactacaacggcaagcactaccggaaaa
gcaacaacccaaccttctacaacaatttctgcttcttcagagtcggctcatgtggtgccc
actattgaacctagtttcattattgtggagctgattatgtattccaactatgaatccagc
cttgataacatcttccaggtcaatgacacaatccttgttattgcatctatctttggcccc
tttcaaccgatttcagctcagatcatttggtctatcacagaccatctatcaggtgaatca
attgaacatacagtctactctcaagatgcagtgctcgtcacattcccagtatcttcactt
tttgccattaatgcaattgctgtcgggaccacccacaatctcacatctacggtgaatgca
acagtacttcccacaataaacattctctgccctgctcacatctatgctggcatagaagta
tggtgtgctcttgtcacagatgacatcgttgagtattccaattataccttctgttttgat
ggtagtgcttgctcgactgcaaatccaacttattggtctttagctgacatccccgatccc
ttgatagacagcacttcttctatggagggactttttgccagctttcaaaatcatctgtat
tcagatgttagatcttatacggtaacagcggagatatttcaaattttggccttttcagtt
caagtagatgtgattgagaaacctgagtgtataaggaaacttggatttgtgaatggaaaa
ggcaacagcacacatccagctgggttcctcagagcatctgacattggcatctcagccaac
atgaaacttgatgaagaatgcaatgaccctatgacctctgacttcaagtggtggatattc
acatctgacgaaaatgatgttgcagtgatcgccttcgaaaagatcacacatattcctcaa
gtgacaattccacaaggaacactcccttatggtattcatagcttgaatctcaaagtggag
atgaatcatagaacatcaggagaggtcactggtgaagaacagatcatcacctggcttgaa
atcctgccatctccattggtagcagtaatcaaaggtggagcttctcgatctcacggtata
tcttccagtttgatagtagatggatcaacttcatatgaccccgatgggtcatccggtgac
ttgaccttcgtgtggtactgtgtaatggttgatggtgaaaccatgtacttgtctatggat
gaagctatgcaaaatacagatgatgcctgttttgaagatgaagaaatcttggaaaactca
cactcttccaaggttgaaattatgtctagcatcctgaaagccaatgtaactctgaatttc
tggctcattatttccaaagaaggaagagcatccggttcaactcaacaaagcatcctgttg
actccagggcttttgccagaaatagaaatagattgcatcagtaactgcaacacatactta
ttaacagccgagcgtcttgtcctgcatgcctcatgcagcaactgtgacagtggagatgtg
tctttccaatggagtcttcaatctgatgatagctcaattataagtgatatatctacccag
actacgacaggtcttgaccaatcctacctggtcatcaaacctcatacctttgattccttt
tctgaaagcactggcattgctttacgagttacaggttacctgtccaattccacttcaggc
ggctattctgaattcagtgtccaactcaatgctccacccacattaggcaactgttctgtt
acacccatagaaggttatgccttacaaactgacttcactgtgacatgtcaaggatttact
gatgtggataaccccctaacgtatgagattatgtcgtacagtgatgtcaaagttgcggat
ggagacttcattggtgttggagaaggttttcaactatatgaaggcagtgagtcatcacag
gatggtttcaatctccctgttggagatggtgcacatgattatactatcctgtttcaggtt
aatgtgaaagacaacttcatggctagtacatcagtgttctttacatgtatggtccgccct
cctaccatagatactggaggggcaaacatgactcaggaactgctgaacatgacatcgtct
gttgaatccagtgtgaatacgttattagcagtgggagatacaggacaagctacacagttg
atcagtgcccttggttcaatcctgaattccattggagatggggatgatgatgctgctgct
gatgatgaagggagggataccagatcagagatccgctctactcttgttgactctattgct
gctataccagtagagtccatgacatccctgaaacaaagttctgctgccctcgctgtcatt
actcaaaacaagcaagaaatttctactgacgtacaggtaaaagccgcaaatgcactgtct
gaaatgacatcctttctgaaagctgaatctgggtctcatactcaaggtcaaagtactata
gagtctgctggtactgttctggttgaggggttgtcgaatatcttcagtgctgccaaggaa
actcaaactcacatttctaacaaaacttgtccagttgaagctgaagatgaggcaacaccc
aataagaacctgaccgaagttgccctatcagcaatcaatgacatccaagatgcaatagtt
gcaggcaagattcccagtgaagaagcgaccatcataacatctcgtacacttagcttagca
gtggggagtatcagcaaggaaaagctggctgagacaacctttggaggttcagatgatgat
gatggtattggtagatttgaaatgccatctcaagaaggtgtgttggatcatactctaagc
aacgttaatgggacagtggttagcttgcagacatcagctctgagatggaaccctttcagt
tggggagctggtggtgattccctgaactctagtatcattggaatacagttgaaagtggat
aacaatgcattacaagtcaaagacctgtctgatgacatcagtgtgtacctaccagtagaa
gaaccctttataggtgacccaatggttgtccatatcaccaaggagttctccgcatctatc
tctgtcaaccaatcatcgctcccagaggacggggccttacaccttagagtcttagctgag
aatgaacccttagtagtccttacagtctgcattaccaatattactatcaatgagaccagc
tgtgttggtaatgctaccgtggtacgtgccaccaatgaggatagtgttgtgaattttaca
tggagcatctctgtagctgacctaaaagttgcagatggtataatgataagtctgtatgat
ggtatagatgaacctctctatgtacatgacaacatcacactctctgttttcatgcataca
tcacaatgtactttttggaatgaagatgaagagtcatgggacagcacagggtgtaaggtc
ggtcctctctctaagccctcgtcaacccactgtctctgcaatcatctgaccttctttggg
tcatcactctttgttccaccaaacaagatcaatatcttccaggatgctaagttattcctg
acctttgtggataaccccattgtcgtcagctttgtgatgtgtattctggcaggctttgtc
ttagtggcggtatgggcgaggaggaaggataaacgagatgcggcaagagctgcagtcact
gtgttggatgacaatgacccattccatcattaccgttatgatgtcaccatagtcacaggg
atgcgccgtggttcaggcacaacagcaactgttacactaactctgatgggcaagaatggt
cgcagcgatccacacgtcctgcatgacaggttctcacctgtcttgaccagaggttcgaca
gattcgttcttgttgaccactgcagaaggtctcggagaaattcaatctttaaggctgtgg
cataacaatgctggcactagtcctcactggtatgtgagccattgcgtagtccatgatctg
gagagtgacgagcgctactacttcatctgcaacagttggatgatgattggaggtggaggg
gttggtcttgacaacaccttccatattgcatcatccaaagacttgcacaagtttggacac
ctgttcactgccaggactgtacgtgatctgcgtgatggccatctgtggttgtctgttctg
atgcgtccaaagcacagtaactttacccgtctgcagcgagcattctgttgcctgtccctt
ctcatgtgctctatgatgacaagcattatgttctatggaatcccaaatgatccagccgat
caggtcatggactttggcacttttagaattaccatcaaagagatcatcatcggcattgag
agctctctaatctccttcccaatcaatctcctcattgtgcagatcttcagacacatcagg
ccaagtatcaaacttcgaacagctgctaacaaagaaaaatacatggtaaaactgaagccc
gaaattgcccattcactttcaagtattgacttgaccaagaaggaagattcggaaagggag
tctgctgatgataaattgacattaaaaagcctgacaaaatccgtccaacataaagacaga
gaagtctcttcccaacaatcaccagaaaggacttctcgtcattgggttggtggaggtgat
agttcttccacatcttccaaagataacaaccctctaaacgcctcatctgcttcttctacc
acttctctgccatcatgcatttctttgaatagtacgctgttccaccaggagatggacgac
tttgtccttcgatctgtctctgcagtcatgaaagaatggggaagtgacaagagttcaaag
cgtgtagaggtatttggacacggagggctagagaaagtcgatagaacacggagtgaaact
actgacgacacaaccactcagtcagtcaaacaaatacctaattgcgtgaaagagggaatt
gaagaaaatagccgtgactacgattctgatctcatgggaaagaaatgtgatggtttcacc
cataacttctacctgtactcacggttgatggaaatggtcaaggatctatcagtcatatct
tcagacaggttctatgaccctgaagaacacaaacaagctatgagggaagcccagaccatc
gtcatgacagcattggatattgagacacctcccatatcacctgatgagtctctgctatca
gattctgtggtagaaggaaagattaagctgaaacagagaaccaggggtcttccacctgca
tgcgtgtacattgcatggttgttggtgtttgcaaccgtggtcgcttcttcttacatcacg
atgctttatggcctcaaatatggcaaacaaacaagcatcgactggttgatctctctgttt
atagctacctttcagagcatcttcatcacacagcccatcaaggttctgttccttgccatc
tttgtttcacttatcttcaagcagattgaaccagaagaagacttcagtgatgacattgag
gaactccaagtagatgatgctacacagactcgcagagcacttcagaaacggaggaacacc
atcgcccattaccatcccccagctacctccaccataaactcccacctgaagaacaagcaa
ctgcaggctcgcatgtattccctgctgtggcagattgctggtttcttatgtttcttctat
ctgctcatcactatcacatacagtcagagagataggcaggcgtactggatgaccagaggt
acaaagggactcttcttccatcacaagaataaagactatgcattgatgaatgacttccgt
agtttcctgacgtgggctaactcaacactcctgcctggtcttcttagtgaggatagatgg
ggagccgagaagcaatccacattgattggtgggggtctgagactaaggcaaatcagggtt
aaaccaagttcctgtaaaactcaccccttgttcgtagacgtgatcaatgactgccgagcc
ccttttacttcggattcagcggacagagaattatacaatgcatcttggagtcagcccata
gttaacacatctgccttcttgaactcatctcagacagtggaagagtggagtctttcgaac
tactctccctggcacttctacccagacagatctacaggaatgtggggccacacaatggtc
cttccaaacagtggctacatctgggtactgggcgccgactacgaagaggctgtgaattcc
ttggcagagatggtgaatgcaaggtggttggatgctcgcaccagagcgctgtttgcagag
tggacagcatacaatgcaaacaccaatcttttctgtgtagttacattcctcatggagacc
cctgcatctggtggaatgctgaagctccccgaggtacaagcagttaggctgcaccgttac
gctgcaaactataaactctttgtcatcatctgtgaaatcctctttgttttggccctcttc
tttgtaatgtatcgagagtacctcaggtacaagcccatcggtatcagaaagtacctcagt
gacaaatggaacttgttggaaattgccatcattgtcaactgctatgtatctgcaggatta
tacacctaccgctacattatcaccaagcagctcttccataaaatgagagacgaatcagtt
cgctttgtaagtttccgttctgcagctagcagtgacaatgctctaggatatagctttgca
gttatcatcatccttagctgtgtcaagtttctttatctcttgcgtctcaaccctcgcatg
tatcttctcactgctgtcatgtctgactgctaccatgaagtcactgcattcagctttctg
ctcttagtcctagtacttagctttgcctttcccatgtccatcacctttggtagccttccc
cactatcgtgatatcaccaaatcagcaatcactctcttcaccacacttccaggtaatttt
gtctatgatgacttgatgtccgttcatcgaacgattggtccgcttactcttctgatattc
cagtactggggttgttatttatttttagatcttttgatagctgccctcaatgaaagcatg
gtgaccatcaggagaaatcctcctccaccttcagggaacagaatgataggtcttctgctt
ttgtcaaagatattctctttgctgggtatcccagaaaggtttcacataggactggattag
DBGET
integrated database retrieval system
