KEGG   Lytechinus variegatus (green sea urchin): 121410081
Entry
121410081         CDS       T11173                                 
Name
(RefSeq) U3 small nucleolar RNA-interacting protein 2-like isoform X1
  KO
K14793  ribosomal RNA-processing protein 9
Organism
lvg  Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:lvg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:lvg03009]
    121410081
Ribosome biogenesis [BR:lvg03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    121410081
SSDB
Motif
Pfam: WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_IFT122_1st Beta-prop_THOC3 Beta-prop_WDR3_2nd WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 EIF3I Beta-prop_EML WD40_Gbeta Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR75_1st ASA1 CFAP251_N WD40_MABP1-WDR62_2nd Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd Beta-prop_DCAF12 NBCH_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_WDR41 DSE1_N Beta-prop_IP5PC_F Beta-prop_SPT8 Beta-prop_VPS8 Beta-prop_WDR75_2nd Beta-prop_NOL10_N Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_RIG_2nd PAC11 Beta-prop_DCAF4 WD40_like WDR54 Beta-prop_ACSF4 TRM82_WD
Other DBs
NCBI-GeneID: 121410081
NCBI-ProteinID: XP_041457872
LinkDB
Position
3:6189685..6229842
AA seq 473 aa
MSFFIRGTRKRVVKSKKVVSTDGDKPNKKKKFKEVMDEEILSDSDINSPDDDEGRGSSDA
SSGDEKEQETAQEKRLRLTKQYLAHLEAEENEAEESLTPDKDAIAHRLKSELLEQSGKLQ
KFVASEYACPSINDLTILRGHQLAITCLVISSDNKFIFSGSKDCSIIKWNVATGKKEHKI
PGGRKGTEGKHIGHTDHILALALSSDDTLLVSGCRNKLIHVWDSCTCTLKHTFKGHRDAI
SGLAFRKGTHQLFSSSHDRSVKIWNLDEMAYVETLFGHQDAITGIDSLTRDRSITSGGRD
NSIRIWKVLEESQLIFHGHLGSIDCVKLINEDHFISGSDDGSIALWSVMKKKPLSIKRDA
HLGPVGATHSCKIKENWICSVAALQGTDLVASAGSKDGTIRFWQCSEGYKSLSPAFQVPL
EGFINSMQFSSDGTFLVAGVGQEHRLGRWWRLKEAKNSIAILKLHKTNAENIR
NT seq 1422 nt   +upstreamnt  +downstreamnt
atgtctttctttattcgaggaactaggaaaagggttgttaaatcgaaaaaggtggtctct
acagatggcgataaaccaaataaaaagaagaagttcaaggaagtgatggatgaggagatt
ttgagtgattcagatatcaatagccccgatgatgatgaaggaagaggttctagtgatgct
tcatctggagatgaaaaggaacaggagacagcgcaggagaaacgacttcgtctcactaag
caatacttagcacatttagaagcagaagaaaatgaagctgaagaatcccttaccccggac
aaagatgctattgcacacagacttaagtcagaactgttggaacagagtgggaaacttcag
aagtttgttgcttcagagtatgcatgtccatctattaatgacctcactatcctgcgaggt
caccaactagccatcacatgcttagtgatatcatcagacaacaagtttattttcagtgga
agcaaagactgttccattattaaatggaatgtagcgacagggaagaaagaacataagata
ccaggaggaaggaaaggaacagagggcaaacatattggacatactgatcacatcttagca
ctcgctctgtcttcagatgacactctcttagtatctgggtgcagaaacaagctgatccat
gtatgggattcatgtacatgtactcttaaacacacattcaaaggtcatcgtgatgctata
tcaggcctagctttccgaaagggcacccatcagttattcagttcatcacacgatcgttca
gtaaagatttggaatcttgatgagatggcatatgtagaaaccctatttggacatcaagat
gcaataacaggtatagacagcttgacaagggaccgttccattacatcaggagggagagat
aactctatcaggatatggaaggtgcttgaagaatcacagctcatcttccatggccacttg
ggctctattgactgtgtaaagctgataaatgaggatcattttatttcaggatcagatgat
gggtcaattgctttatggagcgtcatgaagaagaaacctttgagtataaaacgtgatgct
catcttggacctgtgggagcaactcattcctgcaagatcaaagagaattggatatgttct
gtagcagctttgcagggaactgatcttgtggcatcagcaggatccaaagatggaaccata
agattctggcagtgctctgaaggttacaagtcattatctccggcattccaagttcctttg
gagggtttcattaactccatgcaattttcaagtgatgggacatttcttgttgctggtgtt
gggcaagagcatcgtctaggacgatggtggcgtctcaaagaagcgaagaacagcattgct
attctcaaactccacaaaaccaatgctgagaatatcagatga

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