Lytechinus variegatus (green sea urchin): 121410109
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Entry
121410109 CDS
T11173
Name
(RefSeq) histone deacetylase 6-like isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lvg01009
]
121410109
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121410109
04131 Membrane trafficking [BR:
lvg04131
]
121410109
03036 Chromosome and associated proteins [BR:
lvg03036
]
121410109
Enzymes [BR:
lvg01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
121410109
Protein phosphatases and associated proteins [BR:
lvg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121410109
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
121410109
Membrane trafficking [BR:
lvg04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
121410109
Chromosome and associated proteins [BR:
lvg03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
121410109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
121410109
NCBI-ProteinID:
XP_041457919
LinkDB
All DBs
Position
3:7170669..7273420
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AA seq
1124 aa
AA seq
DB search
MADADLMQEVSLKKESTERRKESEKSSSLTPTGTQETKSIQNDSGGRKKSKKAARNDQRA
ALRAAKKKGRKKEEHVDGDVAVQMTGLVLDDSPPPRPTGTGLVYDERFKEHYCPIGSDHG
KSECPERYTVCIEKLQEGGLLDRCQRVPSRAASDEEILTLHSQEYLDTLKKIGSLSSDEL
KELAESYDSIYLCNKSFEIAQLTLGGLLDLTEKVVKGELRNGFACIRPPGHHSQRNNANG
YSLLNNVALTAKIAKTKWNVDRILIVDWDVHHGQGIQYLTQDDPSIMYFSMHRYEHTSFW
PHLEESNYDNIGERSGKGYNINVPWNKIGMGDAEYLAVFQQLLIPLSYEFNPQLVLVCAG
FDAVEGDPKGEMVVSPDCFGHMTHHLMGLAQGKVVLSLEGGYCLEGLSQSASICTRTLLG
DPCKPLSQLKHISENSLETIHNVTEALKPYWKCFQYDLNKLSNEEPIQSEDVSSTTPDVS
HQDSTSRKTDVDTMTNTLLREIMISTPPHRTGLVYDERMKLHRTFNHPERPERIARIYSK
HQEHGLLDRCIRLQTRQATFEEMETCHLADMIGDIRETSKYTARELIDKQDKFNPTRYSR
DIYVHPVSNAPFRDIFINPDTYLCASLAAGCTLNLVDAVLSNQVLNAVGIVRPPGHHADS
ETASGFCFFNNVAIASRYAQNKYGVKRVLIVDWDVHHGNGTQRIFETDPSVLYISLHRHD
NGMFYPIGPEGAADQVGKGDGQGYNVNIAWNTGNKGLMGDAEYIAAFHHIIMPLAYQFNP
ELVFISAGFDAAKGDPLGNCLVSPEGYGHMTHMLSSLAGGRVITVLEGGYNLHSIAVSMA
MCTRIMLGDPCPDLSPGFPSCCGMQAIYDAAKSHQKFWSSMKDKVCFLETMMYKENGTED
SLSSSNAAPRDEVTSLGPERVDEVSSSRLDDGEKMINEEDGIKDILEGISGMNLQQSREE
SPGGGRGARDQVIHDDVPEDEALGACGVSDQATTPEAEDNIISSIQRTFGPEVEMHAVIP
QPWCPHLESDVRPLPSNGLDVSLPCRDCGDTKENWLCLHCYQVYCGRYVNEHMLMHGLES
NHLMVLSYADLSVWCYGCDAYIHNEILIPAKRAAHLDKFGVPGV
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgctgatctaatgcaagaggtctctcttaagaaggaatccacagagagaaga
aaagaatctgaaaaatcttcatctctaactccgacaggcactcaggaaacaaagtcaatc
cagaatgatagtggaggcagaaaaaaatcaaagaaagcagctaggaatgatcaaagagca
gctcttcgagcagcaaagaagaaaggaagaaaaaaagaggaacacgtagatggggatgtt
gctgttcaaatgactggtttggtgctagatgattctcctccaccaagacccactggtact
gggttggtttatgatgaaagattcaaggagcattactgccctattggaagtgatcatggg
aagagtgaatgtccagagcgctatacagtatgcattgagaagctccaagaagggggactg
cttgatagatgtcaaagagtaccttctcgtgctgcatcagatgaggaaatattgactttg
cacagccaagaatacttagacactttgaagaaaattggttctttatcatcagatgagttg
aaggagcttgctgagagttatgattctatctatctttgtaataaaagctttgagattgct
cagctaacattaggtggactgttagacttgacagagaaagttgttaaaggagagctgaga
aatggatttgcatgcatcagacctccagggcatcatagtcagcggaacaatgccaatgga
tacagtcttcttaacaatgttgctctcactgctaaaatagccaagaccaagtggaatgtt
gatagaatattaattgtagattgggatgttcatcatggtcaaggaatccaatatctcaca
caggatgatccaagtataatgtacttctccatgcatcgctatgagcacacaagcttctgg
cctcatcttgaagaatctaactatgataacatcggagaacgatctggaaaaggttataac
atcaatgtgccttggaacaagattggaatgggtgatgcagaataccttgctgtctttcag
cagctacttattcctctatcttatgagttcaatcctcagcttgtccttgtgtgtgctggc
tttgatgcagttgaaggagaccctaagggtgagatggtagtaagtcctgactgttttggt
cacatgacacaccacctgatgggattagcacaaggcaaggtagtgttaagtttagaaggt
ggatactgcttagaaggcctcagtcagtcagcttctatatgcaccagaacacttcttgga
gatccatgcaagcctctatcacaactcaaacacatctcagaaaattcattggaaaccata
cacaatgtgactgaagccttaaaaccatactggaagtgttttcaatatgatcttaacaag
ttatcaaatgaggagcccattcagagtgaagatgtgagtagtacaacaccagatgtatcc
catcaggacagcacttcaaggaagactgatgtagatactatgactaatacactactcaga
gaaatcatgatatcaacaccaccacacaggactggactagtttatgatgagcgaatgaaa
ttacacagaaccttcaatcacccagaacgacctgagagaatagcaaggatatacagcaaa
catcaagaacatggattgttagatagatgtatcagattacagacaagacaagctacattt
gaagaaatggaaacttgtcatttagctgacatgataggagatatcagagagacaagcaag
tacacagctagagaattgattgataaacaggataagtttaatcctacaaggtatagcaga
gacatctatgttcatccagtaagtaatgctccattcagggacatctttattaatccagat
acgtatctgtgtgcgtcattagccgctggatgtactctcaatcttgttgatgctgtccta
tcaaaccaggtcttgaatgctgttggaattgttagaccaccaggccatcatgctgatagt
gagactgcatctggtttctgcttcttcaacaatgttgctattgcttccagatatgctcag
aataaatatggtgttaaaagagttttgattgttgactgggatgttcaccatggtaacgga
acacagagaatctttgagactgacccatcagttctctacatctcacttcatcgccatgat
aacggtatgttctatcctattggaccagagggagcagcagatcaagttggaaaaggtgac
ggacaaggatacaatgtcaacattgcatggaatacaggtaataaaggcttaatgggtgat
gctgaatacatagctgcttttcatcatatcatcatgcctctagcataccagtttaaccca
gagttagttttcatttctgctggtttcgatgctgcaaagggagatcccctggggaattgt
ttggtatcaccagaaggctatggtcacatgacccatatgcttagcagtctcgctggtggg
cgtgtcattactgtgttagagggaggttacaacttgcattccatagctgtttccatggcg
atgtgcacccgcatcatgttaggtgatccgtgtcctgacctttcacctggttttccatca
tgctgtgggatgcaagcaatctatgatgctgccaagtctcatcagaagttttggtcttcc
atgaaagataaagtatgtttcttggagacaatgatgtataaagaaaatggcactgaagat
tctctctcttcatcaaatgctgcaccaagggatgaagtgacctcgttgggaccagagaga
gttgatgaggtttcatcttcaagattggatgatggagagaagatgatcaatgaagaagat
ggaataaaagatatcttagaaggaatatcagggatgaatcttcagcaatcaagagaagaa
tctccaggaggaggaagaggtgccagggatcaagttatacatgatgatgttcctgaagat
gaagcactaggagcatgtggtgtatcagatcaagctacaactccagaagcagaagataac
atcattagtagcattcaacgaacatttggtcctgaagtagagatgcatgcagtgattcct
cagccatggtgccctcatttagaatctgatgtaagacctctaccttctaatggactagat
gtatcattaccttgcagggattgtggcgataccaaagagaattggctgtgtttacattgc
tatcaggtgtactgtgggcgttatgtcaacgagcatatgttaatgcatgggttggagtct
aatcatcttatggtgcttagctatgctgatttgtcagtttggtgctatggatgcgatgct
tatatacataatgagattctcataccagcaaagagagctgcacatcttgataagtttggt
gttcctggagtttag
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