Lytechinus variegatus (green sea urchin): 121410291
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Entry
121410291 CDS
T11173
Name
(RefSeq) WD repeat-containing protein 82-like
KO
K14962
COMPASS component SWD2
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121410291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121410291
03036 Chromosome and associated proteins [BR:
lvg03036
]
121410291
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121410291
Chromosome and associated proteins [BR:
lvg03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
121410291
COMPASS/SET1 complex (yeast)
121410291
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Gbeta
WDR55
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_NOL10_N
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
DSE1_N
Beta-prop_VPS8
WDR90_beta-prop_4th
WD40_RFWD3
CFAP251_N
Beta-prop_SPT8
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
PAC11
Beta-prop_DCAF4
Beta-prop_NUP159_NUP214
Beta-prop_WDR35_TULP_N
PROPPIN
MIOS_WD40
Lumazine_bd_2
Motif
Other DBs
NCBI-GeneID:
121410291
NCBI-ProteinID:
XP_041458217
LinkDB
All DBs
Position
3:complement(14587188..14605972)
Genome browser
AA seq
315 aa
AA seq
DB search
MKLSDQVMRSYRVAKLFKDQNTERINSIDFSHNGETLISSSEDDSIVIYDCLEGKPKRTL
YSKKYGVDLIRFTHAQNTVIYTSNKVDDTIRYLSLHDNKYLRYFPGHTKKVVSLSMSPID
DSFLSGSLDKTIRLWDLRSPSCQGLMHLQGRPVASFDPEGLIFACGINSEMIKLYDLRSF
DKGPFTTFKLLQDRDCDWTSLKFSADGRKILITTNGPVIRLIDAFTGQAQQTFMGHLNGK
GARLEASFSPDAQYVLSGSQNGIIHVWNTENGHKVATLESKHEDNPIYCLQFNPKFLMLA
SSSQHMAFWLPNVDE
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtccgaccaagtaatgagaagctatcgtgttgcgaagctttttaaagaccaa
aacacggaacggatcaacagcattgacttctcacacaacggagaaacgcttatatcgagc
agtgaagacgattccatcgtaatttacgattgtttagagggaaaaccaaagaggactctc
tatagcaagaaatatggtgttgacctcatccgctttacacatgctcagaatacagtcatc
tatacatccaataaggttgatgacacaattcgttatttatctcttcatgataacaaatat
ttaagatactttccaggtcatacaaagaaggttgttagtttgagcatgtcacccatcgat
gatagctttctctctggatcattggataagacgatcagattatgggatttgagatcacct
agttgtcagggtttgatgcatctacaaggcaggccagtagcatcatttgatcctgaaggt
ctcatctttgcttgtggaatcaactcagaaatgatcaaactctatgacttacggtccttt
gacaagggtccttttacaacattcaagctgcttcaagatagagattgtgattggacatca
ctaaagtttagtgctgatggaaggaagatactcattacaaccaatggacctgttattaga
ctcatagatgcatttacaggacaggcacaacaaactttcatgggtcatctgaatggtaaa
ggagcaaggttagaggcatcatttagtccagatgcacagtatgtcttatcaggatcacag
aatggtatcatacatgtatggaacacagagaatggacacaaagtagccacactggaatcc
aaacatgaagataatcctatctattgtctgcaattcaaccctaaattcctcatgcttgcc
agctcatcgcaacatatggctttctggttgccaaacgttgatgaatga
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