Lytechinus variegatus (green sea urchin): 121410482
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Entry
121410482 CDS
T11173
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lvg03016
]
121410482
Enzymes [BR:
lvg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
121410482
Transfer RNA biogenesis [BR:
lvg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
121410482
Prokaryotic type
tRNA splicing ligases
121410482
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
121410482
NCBI-ProteinID:
XP_041458541
LinkDB
All DBs
Position
3:complement(21314414..21337051)
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AA seq
508 aa
AA seq
DB search
MATTVRTYNEELKYLNKLSGNCWQIKKGFVNNMQVEGRFYVDKKLERLMFEELQHSCRSK
GVGGFLPAVKQIANVAALPGIIGYSIGLPDIHSGYGFAIGNMAAFDMSNPDAVVSPGGVG
FDINCGVRLLRTNLTEEDVLPVKEQLAQSLFDHIPVGVGSKGVIPMGAKELEEALEMGMD
WSLREGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEI
YNNHAAKKMGVDRKGQICLMIHSGSRGLGHQVATDALVQMEKAMKRDKIEVNDRQLACAR
INSQEGQDYLKSMAAAANYAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNIAK
VEEHMLDGVQKTLLVHRKGSTRAFPPHHPLIPVDYQMTGQPVLIGGTMGTCSYVLTGTDT
GMNTTFGTTCHGAGRAWSRAKSRRNLDYQQVLRNLSDMGISIRVASPKLVMEEAPESYKD
VTSVVNTCHEAGISSKVLKLRPIAVIKG
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggcgactaccgttcgaacatataatgaggaactgaagtacctcaacaaactttctggc
aattgttggcagatcaagaaaggatttgttaacaatatgcaggtggaaggacgcttttat
gttgacaagaagttggagaggctgatgtttgaagagctgcaacattcctgtagatcaaaa
ggtgttggtggttttttaccagcggttaaacagatcgcaaacgtagcagcattaccaggc
atcattggctactcaatcggactaccagatatccattctggatatggctttgctattggt
aatatggcagcctttgatatgtcaaatccagatgctgtagtatcccctggtggtgtggga
tttgatattaattgtggagtgcgtcttctgcgaacaaacctgactgaagaagatgttcta
cctgtaaaggaacaactagcacagtcactctttgatcatattcctgtaggagtaggctca
aagggggtcattccaatgggtgccaaagagttagaagaagctctagagatgggaatggac
tggtctcttagagaaggttatgcttgggcagaggataaggaacactgtgaggaatatggc
cgaatgttacaagcagatccaaataaagtcagtgctagagcaaagaaaagaggattacca
cagcttggaacactaggagcaggcaaccactatgctgagattcaagtagtggatgaaatc
tacaacaatcatgctgctaagaagatgggagtagaccgaaagggtcagatctgccttatg
atacacagtggaagcagaggattgggacatcaagtagccacagatgccttggttcagatg
gagaaagcaatgaagagagataagattgaggtgaatgatcgtcagctagcctgtgctcgt
atcaactcacaagaaggtcaagattacttgaaaagcatggcagctgctgctaattatgct
tgggtaaatcggtcaagtatgaccttccttactcgccaggcatttgctaagcaattcaac
accacacctgatgaccttgacatgcatgtaatctacgatgtctcacataacattgctaag
gttgaagaacacatgttagatggtgttcagaagactcttctagtccatcgtaagggatca
acaagagcatttcctcctcaccaccctctcatccctgttgattatcagatgactggacaa
cctgtactcattggtggaactatgggtacatgtagctatgtcctgacagggacagatact
ggcatgaataccacatttggaacaacatgccatggcgctggtcgagcttggtcacgtgca
aaatcaagaagaaacttggattatcaacaagtgctcaggaacctctctgatatgggtatc
tcaatcagggttgcttcacccaaacttgtcatggaagaggctccagaatcctacaaggac
gtaaccagtgtggtgaatacctgtcatgaggcaggtattagcagtaaggtactcaaactt
cgtcctattgctgtcatcaaaggttaa
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