Lytechinus variegatus (green sea urchin): 121410489
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Entry
121410489 CDS
T11173
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg04140
Autophagy - animal
lvg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121410489
04148 Efferocytosis
121410489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lvg04131
]
121410489
Membrane trafficking [BR:
lvg04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
121410489
Hops complex
121410489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
121410489
NCBI-ProteinID:
XP_041458554
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Position
3:21460381..21479190
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AA seq
833 aa
AA seq
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MAHVTGNWNPLGDVFYRKVELYSMDRLWQEVADLRKFKVAVAPFGGPIALMRDSSKITQV
RGSSHIVIFIFSAAGKEISRINWNSGNVIHIGWSLSEDLLCTQDDGTVLVYDIFGKYQRN
FNMGQESRESKVIECKVFHNTSYGGTGVAVLTGTYRIYVVNDVHNPTSRKMMEVPGLDAP
PSSWCVIGGDRQNHILLARDKRLYKLDRSDMQQELLETKTKEVNAFIEMAVSFDNRFLAL
FSDTGLLWIGSSDLQKTYCEFDTSSQMRPRQLVWCGTGAVVGYWENLLLVIGPQKDWIKY
NMDTDAILIPESDSLHILQTHTHELLQRVPGVVEDIFKIGSMAPGAMLYEACREFQKESQ
KADEYIRMIKDQLSLAVEQCIEAAGAEYEPTVQKLLLRAASFGKCFGTNVNADKFVNMCK
LLRVLNAVRDYQIGIPLTYEQLKKLTLNVLMDRLILRRQWALAQQISQYLKLPESDGESR
ILGHWACYKVEQKHIPDELIAQSIKEKLGDTPGIAYSEIAKKASECGRTQLAVKLLEYEP
RAAEQVPLLMTMRDSRTSLKKAIESGDTDLVYMVLLQLKEDLPRGEFLMMLRNHPQAQDL
FMQLCREQHPNLLLDLYNQNDNFQELANTAVRDSLNEKDLQKRLSHLNAAQDNYKKAAND
FSMKATEEEIKLLGYQMRMQEQYREQFLYLSLHDTIHKLIAKNLGKMAEQLRKEFKVPDK
RFWWLKIDALAGAGEWIELERFAKSKKSPIGYEPFVEVCMKYHQKYEANKYAAKVTPEHR
VKMYIRMGTLDEAAELAFQQKSEEDLNLVLRNCAGNRQLSAKINTMKQQLGKK
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacgtcactggaaattggaacccactgggcgatgtgttttataggaaagtggaa
ctgtattctatggacagactatggcaggaggttgcagatcttaggaagttcaaggttgct
gtagctccatttggaggacctattgctctgatgagagacagtagtaagattacccaggtc
aggggttcatctcatatagtcatctttatcttctcagccgcaggaaaagaaatatctaga
atcaattggaatagtggtaatgtgattcacattggctggtctttatcagaagatcttctc
tgtacccaagatgatggcactgtccttgtctatgacatctttggaaaataccaaaggaac
ttcaatatgggacaggaatcaagagaatcaaaggttattgaatgcaaagtgtttcataac
acatcatatggaggaaccggtgttgcagtcctgacaggaacctacaggatttatgtagta
aatgatgtacataatcctactagcagaaagatgatggaagtgccaggactagatgcccca
ccgagcagctggtgtgtaatagggggtgacagacagaatcatatcctcctagcaagagac
aaacgtctttacaagctagaccggagtgacatgcagcaggagttattggaaaccaagact
aaagaagtgaatgctttcattgagatggctgtgtcatttgacaatcgttttctagcttta
ttcagtgatacaggtctactttggatagggtcttctgatttgcagaaaacctattgtgag
tttgatacaagtagtcagatgcgtcccagacagctggtatggtgtggtactggtgctgtg
gtgggatactgggagaaccttcttctagtgatcggaccacagaaggattggatcaaatat
aacatggatactgatgccattctaatcccagagagtgatagtctacatatcctccagacc
cacacacatgaattgcttcaaagagtaccaggtgttgttgaggacattttcaagattggt
tcaatggctccaggtgctatgctctatgaggcttgtagggagtttcagaaagaaagtcag
aaagctgatgagtatatccgtatgatcaaagatcagttgagtttagcagttgaacagtgt
atagaagcggcaggagcggagtatgaaccaactgtacagaaattactactcagggcggcc
tcatttggaaagtgctttgggactaatgtgaacgcagacaagtttgtgaatatgtgcaaa
ctactaagagtgctgaatgcagttagagattatcagattggaattccactcacatatgaa
caactcaagaaattaacattgaatgtacttatggacagattaatcttgagaagacaatgg
gctttggcacagcagatcagtcagtatctaaagctacctgaatcagatggtgaaagcagg
atattaggccactgggcttgttataaggttgaacaaaaacacattccagatgagctgata
gcacagagcatcaaggaaaagcttggtgatacaccaggcattgcttattcagagattgct
aagaaagcatcagaatgtggaagaacacaactagctgtcaagttattggagtatgagcca
agagcagcagaacaggtaccactgttgatgacaatgagagatagtcggacatcacttaag
aaagctattgagagtggagatacagatttagtatacatggttctgcttcagttaaaagaa
gatctaccccgaggtgaattcttgatgatgctaaggaaccaccctcaggctcaggacctc
tttatgcagctgtgtcgagagcaacatcccaacctcctcctagatctgtataatcagaat
gataacttccaagaactggccaacactgctgttagagatagtctgaatgagaaggattta
cagaagaggttatcccatttgaatgcagctcaagataactacaagaaagctgctaatgat
ttctctatgaaggcaacagaggaagagatcaagttattaggttaccagatgaggatgcaa
gagcagtatagagaacaattcctttacctttcactccatgataccatccataaactcatt
gctaagaaccttggtaagatggctgaacaactcagaaaagaattcaaagttccagataag
agattctggtggttgaagattgatgccttagcaggggcaggagaatggatagaacttgaa
aggtttgctaaaagcaagaaatcacccattgggtatgagccatttgtagaggtgtgtatg
aaatatcaccagaagtatgaagctaacaagtatgctgccaaggttactcctgaacataga
gttaagatgtacattagaatgggaactcttgatgaagctgcagaactagcattccaacaa
aaaagtgaggaagatcttaatctggttttaagaaattgtgctggtaacagacaactctca
gctaagattaacaccatgaagcaacaacttggcaagaaataa
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