Lytechinus variegatus (green sea urchin): 121410510
Help
Entry
121410510 CDS
T11173
Name
(RefSeq) THO complex subunit 2-like
KO
K12879
THO complex subunit 2
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03013
Nucleocytoplasmic transport
lvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121410510
09122 Translation
03013 Nucleocytoplasmic transport
121410510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121410510
03041 Spliceosome [BR:
lvg03041
]
121410510
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
121410510
Spliceosome [BR:
lvg03041
]
Complex C
Other components
EJC/TREX
121410510
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121410510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Importin_rep_2
Motif
Other DBs
NCBI-GeneID:
121410510
NCBI-ProteinID:
XP_041458594
LinkDB
All DBs
Position
1:28280968..28387579
Genome browser
AA seq
1642 aa
AA seq
DB search
MACYLINDEVCKSWEKCGRNEFLKFCRSRISEASDDGIITGNVQALVAGLHDLIDQTIKG
NLKQDLAVSTLSAIVDIHPGVPSILVDVFNIKDIETTSTEDGICKENLISLLTACTAFLD
SGLLKERLDNDTLDAINVLSNKQAFAQRYVRLKTKLYYKQQKFNLLREESEGFAKLVSEL
TQVTCDPSTSSQVSKTIKALIGGFDLDPNRVLDIILEAFETAPELDHVFVPLLRSYMCDP
LTVCQVLGFKFQFYKEENIRTPKSLHKVTAQLLQHHIVELDDIYPHLAPTDVDIFKAHKQ
EIIDARQYARKMSMAVLADKDDKDDKEKEKEKDEQVIDNQKIGLCEAMILIGDWVHAKKL
LDKLPEYGTTSNPTVSKALCNLIESILQPLYTKSCQPQGAKGHHIPSPPKNGTLPAVQNL
GDIKGVLEMCRYLGPYASLQPILIWKLVRLGKALLAQRASMTEEKKEDLNSVFHEMLSVI
EQVILPSISMMPCNACLSEEVWSLMKMLPYHRRYCLYARWINHCYGIHPPMIRIKANTTD
RAKYIMKRLTKENVKPSGRQLGKLSHSNPGVLFSYVLSQIQMYDNLIAPVVDSLKYLTSL
SYDILAYCVIEALANPEKERMKHDETSLSLWMQSLASFCGAMFRKYNIELTGLLQFVANQ
LKVGKSFDLLILREVVLKMAGIEVTEEMTADQLEALAGGELLRAEGGYFTQVRNTKRSSQ
RLKEALLEDDLAVSMCMLMAQEKYRVVYKHEQGTHLKLVGMLYDQCQDTLVQLGGFLSNL
LSIEDYSKHFPDLVNMVTNYHITPESAFFLYRPMCTNNIQSKVDELRRLEKSSKTPSNRT
QRYVQASQAVMSPLTEGINSFHPLKVWDDISPQFYASFWTLSMYDLHVPSPSYDKEINKI
KVTMANVDDNKELASAKRKKEKERYAIIIERLKDEERKQQEHCQRIEARLKKECETWFTA
RSTKNETITQFLQLCVFPRCCFSASDALYCAKFVLTVHKLKTPNFSTLLCYDRVFQDITY
TVASCTEHEASRYGRFLCAMMETVMRWHRDKEIYEKECGNFPGFVTVLRASGTESSNKAD
QLDYENFRHVCHKWQYKLTKAVVACLESKEYTQIRNTLILLTKILPYFPLVQNLGQVLEK
RVDKIRTEEKEKRPDIYALAMGYSGQLKTRKQHMIPEDKFHLKDKPVSSSQSTTQSSESS
SKKATSSSSSTSVSSTSNAILNGVGKEHLSKEADTEKVHGASSKSSNRESSSTTKSSSTS
KSSVKSSSQLQGKSSTSSSSSKSSSNSSKTSTSSASVSASTSSGSKKSDLKSSSDGSKFK
REKDDHKESSVSRSNKEDKASKEHRVIKEEKVVKEVKVQRSSEGKRSGSSEKSHREDGKA
SSSKNYSSDNWGGAPSTELDSWPEEGERVRKVEKKATHRDKSKEKEERGSDGGQRSSKER
SQREESVASNSSQGSVGSASRKESPATSSSDRVEHKRRKVDASAILVSSSSSPDLARETS
SSKHRRSKSKERHREREVLEAPEPERERSREKDKKSEKKRDHSAGDVNHESKRHKGSDSG
HEGKSSKRSSLGDGASSSSGMNGERMDERDRDREMMKEEKSSRRESDVRDKPAKEKKIKR
EPLDDDRDDDRHKSSSSRKRRP
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atggcgtgttatctcatcaatgacgaagtctgtaaaagttgggagaaatgtggcagaaat
gagttcttaaaattttgccgcagtaggatatcagaagcgtctgatgatgggatcattaca
ggaaatgttcaggctttggttgctggtcttcatgacttgattgatcagacaataaaaggg
aacttgaagcaggatcttgcagtgtccacactcagtgccattgtggacatccatcctggt
gtgccatctatcttagtggatgtcttcaacattaaagatattgaaaccacttcaacagag
gatggcatatgcaaggaaaatttaatctctcttctgacagcttgtacagcattcttggat
agcggcttattgaaggagagattagacaatgacactcttgatgctatcaatgttctctcc
aacaaacaagcctttgctcagagatatgtccgactcaagacaaaactatactataaacaa
caaaagttcaaccttttacgtgaagagagtgagggctttgctaagttggtctcggagctt
actcaagtcacatgtgatccttctacaagttctcaggtgtcaaagactatcaaagcactt
ataggtggatttgaccttgatccaaaccgggtccttgacatcatcttagaggcctttgag
acagctcctgagcttgatcatgtctttgttcctctactcaggtcatacatgtgtgaccct
ctaacagtatgtcaggtcttaggcttcaagtttcagttctacaaggaagaaaatatacga
actccaaaatctcttcacaaggtcacagcgcagcttcttcaacatcatattgttgaactg
gatgacatataccctcatcttgctccgactgatgtggatatcttcaaggcccacaagcag
gagattattgatgcaaggcagtatgctaggaagatgagcatggctgttcttgctgacaag
gatgacaaagatgacaaggagaaagagaaggagaaagatgaacaggttattgacaaccaa
aagattggattgtgtgaagccatgattctaataggagattgggtacatgccaagaaacta
ttagacaaactgcctgagtatggcactacgagtaaccctactgtgtccaaggctctctgc
aacctcattgaatctatacttcaacctctgtacacaaagagttgtcaaccacagggagca
aaagggcatcatataccttcacctccgaagaatggcaccttgccggctgttcagaaccta
ggagacatcaaaggagtccttgagatgtgtcgctatcttggaccatatgcatcattacaa
cctatcctcatctggaaacttgtcaggctaggcaaagcactacttgctcagagagcctca
atgacagaggaaaagaaagaagatttgaattctgtctttcatgagatgctatcggtgatt
gagcaagtgatattaccctctatcagcatgatgccatgtaatgcttgtctctctgaagag
gtctggtctctaatgaagatgttgccgtatcatagaagatactgcttgtatgcgcgatgg
ataaatcattgctatggtatccatcccccaatgattcggatcaaagctaatactacagac
agggccaagtacatcatgaagagattaaccaaggaaaatgtcaagccttctggaagacag
cttgggaaactaagccattccaatcccggggtactcttctcttatgtattatctcagatt
cagatgtatgataatctaattgctcctgtggtggattctctgaaataccttacatcactg
tcatatgatatactagcttattgtgtgatagaagctctagcaaacccagagaaggaacgc
atgaaacatgatgagaccagtctttcactttggatgcaaagtttggcatcattttgtggg
gccatgtttcgcaaatacaacattgagttgacaggactactccaatttgttgcaaatcag
ctcaaagttggcaaaagttttgatcttttgatcttgagagaagtggtgttgaaaatggct
ggaattgaggtaacagaagagatgaccgctgaccagttagaagcactggctggaggagag
cttctcagagccgagggaggttactttacccaggtgcgtaacacaaagcgatcatcacag
cgtctaaaggaagctttgctggaagatgacctggctgttagtatgtgtatgttaatggcc
caagagaagtacagggttgtctataaacatgaacaaggaactcatctcaaacttgttgga
atgttgtatgatcagtgccaagatactcttgtacagctaggtgggttcttatccaaccta
ctgagtatagaagactattccaagcacttccctgatctagtcaacatggtcaccaactat
catatcactcctgagagtgccttctttctctacagaccaatgtgtaccaacaatatacag
tcaaaggtagatgaattacggcgactggaaaagagcagtaaaacaccaagtaaccgcacc
caacgatacgtccaggcatcccaagctgttatgtctccattgactgagggaataaattcc
ttccatcctctcaaagtctgggatgatatcagcccacagttctatgctagcttctggact
ctgtccatgtatgaccttcatgttccgagcccaagctatgacaaagaaatcaataagatc
aaggttaccatggcaaatgttgacgacaacaaagaattggcctcagctaaaaggaagaaa
gaaaaggagagatatgctatcattattgagagactaaaggatgaagaaagaaagcaacag
gaacattgtcagaggatagaggcccgtcttaagaaggagtgtgagacatggttcaccgca
cgttcaacaaagaatgagaccatcacacagtttctacagctgtgtgtcttcccacgttgc
tgcttctcagccagtgatgccctctattgtgcaaagtttgttctgactgttcataagcta
aagacaccaaatttctctactcttttgtgttatgatcgggtatttcaggatatcacctac
actgtagccagctgtacagagcatgaagccagtcggtatggcaggttcctatgtgcaatg
atggaaacagtcatgagatggcatagggataaggaaatatatgagaaggaatgtggcaac
tttcctggctttgtaacggtgcttagagcaagtggtacagagtcaagtaacaaggcagat
cagttggactatgaaaacttcagacatgtctgtcataaatggcagtacaaactgacaaag
gcagtggttgcttgtctggaatccaaggagtatactcaaatcaggaatactcttatactt
ctaaccaagatcttgccatacttcccattggtgcagaaccttggtcaggtacttgagaag
agagttgacaagatcagaacagaggagaaggaaaaaagacctgatatttatgctttagca
atgggttactctggccaactcaaaacaaggaaacagcacatgatcccagaggacaagttt
catttgaaagataagccagtttcaagctcccagtctactacccaatcctcagagtcatca
agtaagaaggccacatcgtctagcagttcaacatcagtcagtagcaccagtaatgctatt
ctcaatggtgtaggcaaggaacatcttagcaaagaagctgatactgaaaaagttcatgga
gcaagtagtaagtcgtccaacagagaatcgtcatctacgacgaaatcatcatccacatca
aagtcctctgtcaagtcatcatctcagttgcagggcaagtcatcaacgtcgtcatcatca
tccaagtcgagtagtaattcatcaaagacgtctacatcctcagccagtgtcagtgccagc
acatcatcaggatctaagaaatcagatttaaaatcatccagcgatgggagtaaattcaag
agagaaaaagacgatcacaaagagagcagtgtgagtagatcaaacaaggaagataaagct
tctaaagaacacagagtcatcaaggaagagaaggttgtcaaggaagttaaagttcaaagg
tcatcagaaggcaaaaggtctgggagcagtgagaagtcacaccgagaagatggaaaagca
tctagcagtaagaattacagcagtgataactggggtggggctccgtcaacagagcttgat
agctggccagaggaaggagagagggtaaggaaggtggagaagaaggccacccaccgagat
aaatccaaggagaaggaagagcgtggtagtgacgggggtcaaaggtcatctaaggagagg
tcacagagggaagaaagtgttgcatctaactccagtcagggatcggtaggctcagcatct
agaaaggaatcaccagcaaccagctcttcagacagagtggagcacaagaggagaaaagtg
gatgcatcagctatacttgtatctagctctagctctcctgacctagcaagggagacatct
tctagcaaacacaggagaagtaagagcaaggagcgtcacagggaaagagaagttcttgaa
gcccctgagccagagagagaaagaagtagagagaaagataagaagagtgagaagaagagg
gatcattcagccggtgatgtcaatcatgaatctaagagacataaaggcagtgattcaggt
catgaggggaaaagtagtaaaaggtcatcattaggtgatggagctagttcaagcagtggt
atgaatggagagaggatggatgagagagatcgagatagagagatgatgaaagaagaaaag
tcatcaagaagagaatcagatgtgagggataaacctgcaaaggaaaagaaaatcaagcga
gaaccactcgatgatgatagagatgatgacagacataaatccagcagctcaagaaaaaga
agaccttga
DBGET
integrated database retrieval system
