Lytechinus variegatus (green sea urchin): 121410538
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Entry
121410538 CDS
T11173
Name
(RefSeq) THO complex subunit 2-like
KO
K12879
THO complex subunit 2
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03013
Nucleocytoplasmic transport
lvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121410538
09122 Translation
03013 Nucleocytoplasmic transport
121410538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121410538
03041 Spliceosome [BR:
lvg03041
]
121410538
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
121410538
Spliceosome [BR:
lvg03041
]
Complex C
Other components
EJC/TREX
121410538
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121410538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Importin_rep_2
Motif
Other DBs
NCBI-GeneID:
121410538
NCBI-ProteinID:
XP_041458630
LinkDB
All DBs
Position
1:complement(28546415..28639261)
Genome browser
AA seq
1624 aa
AA seq
DB search
PPSLKFCRSRISEASDDGIITGNVQALVAGLHDLIDQTIKGNLKQDLAVSTLSAIVDIHP
GVPSILVDVFNIKDIETTSTEDGICKENLISLLTACTAFLDSGLLKERLDNDTLDAINVL
SNKQAFAQRYVRLKTKLYYKQQKFNLLREESEGFAKLVSELTQVTCDPSTSSQVSKTIKA
LIGGFDLDPNRVLDIILEAFETAPELDHVFVPLLRSYMCDPLTVCQVLGFKFQFYKEENI
RTPKSLHKVTAQLLQHHIVELDDIYPHLAPTDVDIFKAHKQEIIDARQYARKMSMAVLAD
KDDKDDKEKEKEKDEQVIDNQKIGLCEAMILIGDWVHAKKLLDKLPEYGTTSNPTVSKAL
CNLIESILQPLYTKSCQPQGAKGHHIPSPPKNGTLPAVQNLGDIKGVLEMCRYLGPYASL
QPILIWKLVRLGKALLAQRASMTEEKKEDLNSVFHEMLSVIEQVILPSISMMPCNACLSE
EVWSLMKMLPYHRRYCLYARWINHCYGIHPPMIRIKANTTDRAKYIMKRLTKENVKPSGR
QLGKLSHSNPGVLFSYVLSQIQMYDNLIAPVVDSLKYLTSLSYDILAYCVIEALANPEKE
RMKHDETSLSLWMQSLASFCGAMFRKYNIELTGLLQFVANQLKVGKSFDLLILREVVLKM
AGIEVTEEMTADQLEALAGGELLRAEGGYFTQVRNTKRSSQRLKEALLEDDLAVSMCMLM
AQEKYRVVYKHEQGTHLKLVGMLYDQCQDTLVQLGGFLSNLLSIEDYSKHFPDLVNMVTN
YHITPESAFFLYRPMCTNNIQSKVDELRRLEKSSKTPSNRTQRYVQASQAVMSPLTEGIN
SFHPLKVWDDISPQFYASFWTLSMYDLHVPSPSYDKEINKIKVTMANVDDNKELASAKRK
KEKERYAIIIERLKDEERKQQEHCQRIEARLKKECETWFTARSTKNETITQFLQLCVFPR
CCFSASDALYCAKFVLTVHKLKTPNFSTLLCYDRVFQDITYTVASCTEHEASRYGRFLCA
MMETVMRWHRDKEIYEKECGNFPGFVTVLRASGTESSNKADQLDYENFRHVCHKWQYKLT
KAVVACLESKEYTQIRNTLILLTKILPYFPLVQNLGQVLEKRVDKIRTEEKEKRPDIYAL
AMGYSGQLKTRKQHMIPEDKFHLKDKPVSSSQSTTQSSESSSKKATSSSSSTSVSSTSNA
ILNGVGKEHLSKEADTEKVHGASSKSSNRESSSTTKSSSTSKSSVKSSSQLQGKSSTSSS
SSSKSSSNSSKTSTSSASVSASTSSGSKKSDLKSSSDGSKSKREKDDHKESSVSRSNKED
KASKEHRVIKEEKVVKEVKVQRSSEGKRSGSSEKSHREDGKASSSKNYSSDNWGGAPSTE
LDSWPEEGERVRKVEKKATHRDKSKEKEERGSDGGQRSSKERSQREESVASNSSQGSVGS
ASRKESPATSSSDRVEHKRRKVDASAILVSSSSSPDLARETSSSKHRRSKSKERHREREV
LEAPEPERERSREKDKKSEKKRDHSASDVNHESKRHKGSDSGHEGKSSKRSSLGDGASSS
SSMNGERMDERDRDREMMKEEKSSRRESDVRDKPAKEKKIKREPVDEDRDDDRHKSSSSR
KRRP
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
cctcctagcttaaaattttgccgcagtaggatatcagaagcgtctgatgatgggatcatt
acaggaaatgttcaggctttggttgctggtcttcatgacttgattgatcagacaataaaa
gggaacttgaagcaggatcttgcagtgtccacactcagtgccattgtggacatccatcct
ggtgtgccatctatcttagtggatgtcttcaacattaaagatattgaaaccacttcaaca
gaggatggcatatgcaaggaaaatttaatctctcttctgacagcttgtacagcattcttg
gatagcggcttattgaaggagagattagacaatgacactcttgatgctatcaatgttctc
tccaacaaacaagcctttgctcagagatatgtccgactcaagacaaaactatactataaa
caacaaaagttcaaccttttacgtgaagagagtgagggctttgctaagttggtctcggag
cttactcaagtcacatgtgatccctctacaagctctcaggtgtcaaagactatcaaagca
cttataggtggatttgaccttgatccaaaccgggtccttgacatcatcttagaggccttt
gagacagctcctgagcttgatcatgtctttgttcctctactcaggtcatacatgtgtgac
cctctaacagtatgtcaggtcttaggcttcaagtttcagttctacaaggaagaaaatata
cgaactccaaaatctcttcacaaggtcacagcgcagcttcttcaacatcatattgttgaa
ctggatgacatataccctcatcttgctccgactgatgtggatatcttcaaggcccacaag
caggagattattgatgcaaggcagtatgctaggaagatgagcatggctgttcttgctgac
aaggatgacaaagatgacaaggagaaagagaaggagaaagatgaacaggttattgacaac
caaaagattggattgtgtgaagccatgattctaataggagattgggtacatgccaagaaa
ctattagacaaactgcctgagtatggcactacgagtaaccctactgtgtccaaggctctc
tgcaacctcattgaatctatacttcaacctctgtacacaaagagttgtcaaccacaggga
gcaaaagggcatcatataccttcacctccgaagaatggcaccttgccggctgttcagaac
ctaggagacatcaaaggagtccttgagatgtgtcgctatcttggaccatatgcatcatta
cagcctatcctcatctggaaacttgtcaggctaggcaaagcactacttgctcagagagcc
tcaatgacagaggaaaagaaagaagatttgaattctgtctttcatgagatgctatcggtg
attgagcaagtgatattaccctctatcagcatgatgccatgtaatgcttgtctctctgaa
gaggtctggtctctaatgaagatgttgccgtatcatagaagatactgcttgtatgcgcga
tggataaatcattgctatggtatccatcccccaatgattcggatcaaagctaatactaca
gacagggccaagtacatcatgaagagattaaccaaggaaaatgtcaagccttctggaaga
cagcttgggaaactaagccattccaatcccggggtactcttctcttatgtattatctcag
attcagatgtatgataatctaattgctcctgtggtggattctctgaaataccttacatca
ctgtcatatgatatactagcttattgtgtgatagaagctctagcaaacccagagaaggaa
cgcatgaaacatgatgagaccagtctttcactttggatgcaaagtttggcatcattttgt
ggggccatgtttcgcaaatacaacattgagttgacgggactactccaatttgttgcaaat
cagctcaaagttggcaaaagttttgatcttttgatcttgagagaagtggtgttgaaaatg
gctggaattgaggtaacagaagagatgaccgctgaccagttagaagcactggctggagga
gagcttctcagagccgagggaggttactttacccaggtgcgtaacacaaagcgatcatca
cagcgtctaaaggaagctttgctggaagatgacctggctgttagtatgtgtatgctaatg
gcccaagagaagtacagggttgtctataaacatgaacaaggaactcatctcaaacttgtt
ggaatgttgtatgatcagtgccaagatactcttgtacagctaggtgggttcttatccaac
ctactgagtatagaagactattccaagcacttccctgatctagtcaacatggtcaccaac
tatcatatcactcctgagagtgccttctttctctacagaccaatgtgtaccaacaatata
cagtcaaaggtagatgaattacggcgactggaaaagagcagtaaaacaccaagtaaccgc
acccaacgatacgtccaggcatcccaagctgttatgtctccattgactgagggaataaat
tccttccatcctctcaaagtctgggatgatatcagcccacagttctatgctagcttctgg
actctgtccatgtatgaccttcatgttccgagcccaagctatgacaaagaaatcaataag
atcaaggttaccatggcaaatgttgacgacaacaaagaattggcctcagctaaaaggaag
aaagaaaaggagagatatgctatcattattgagagactaaaggatgaagaaagaaagcaa
caggaacattgtcagaggatagaggcccgtcttaagaaggagtgtgagacatggttcacc
gcacgttcaacaaagaatgagaccatcacacagtttctacagctgtgtgtcttcccacgt
tgctgcttctcagccagtgatgccctctattgtgcaaagtttgttctgactgttcataag
ctaaagacaccaaatttctctactcttttgtgttatgatcgggtatttcaggatatcacc
tacactgtagccagctgtacagagcatgaagccagtcggtatggcaggttcctatgtgca
atgatggaaacagtcatgagatggcatagggataaggaaatatatgagaaggaatgtggc
aactttcctggctttgtaacggtgcttagagcaagtggtacagagtcaagtaacaaggca
gatcagttggactatgaaaacttcagacatgtctgtcataaatggcagtacaaactgaca
aaggcagtggttgcttgtctggaatccaaggagtatactcaaatcaggaatactcttata
cttctaaccaagatcttgccatacttcccattggtgcagaaccttggtcaggtacttgag
aagagagttgacaagatcagaacagaggagaaggaaaaaagacctgatatttatgcttta
gcaatgggttactctggccaactcaaaacaaggaaacagcacatgatcccagaggacaag
tttcatttgaaagataagccagtttcaagctcccagtctactacccaatcctcagagtca
tcaagtaagaaggccacatcgtctagcagttcaacatcagtcagtagcaccagtaatgct
attctcaatggtgtaggcaaggaacatcttagcaaagaagctgatactgaaaaagttcat
ggagcaagtagtaagtcgtccaacagagaatcgtcatctacgacgaaatcatcatccaca
tcaaagtcctctgtcaagtcatcatctcagttgcagggcaagtcatcaacgtcgtcatca
tcatcatccaagtcgagtagtaattcatcaaagacgtctacatcctcagccagtgtcagt
gccagcacatcatcaggatctaagaaatcagatttaaaatcatccagcgatgggagtaaa
tccaagagagaaaaagacgatcacaaagagagcagtgtgagtagatcaaacaaggaagat
aaagcttctaaagaacacagagtcatcaaggaagagaaggttgtcaaggaagttaaagtt
caaaggtcatcagaaggcaaaaggtctgggagcagtgagaagtcacaccgagaagatgga
aaagcatctagcagtaagaattacagcagtgataactggggtggggctccatcaacagag
cttgatagctggccagaggaaggagagagggtaaggaaggtggagaagaaggccacccac
cgagataaatccaaggagaaggaagagcgtggtagtgacgggggtcaaaggtcatctaag
gagaggtcacagagggaagaaagtgttgcatctaactccagccagggatcggtaggctca
gcatctagaaaggaatcaccagcaaccagctcttcagacagagtggagcacaagaggaga
aaagtggatgcatcagctatacttgtatctagctctagctctcctgacctagcaagggag
acatcttctagcaaacacaggagaagtaagagcaaggagcgtcacagggaaagagaagtt
cttgaagcccctgagccagagagagaaagaagtagagagaaagataagaagagtgagaag
aagagggatcattcagccagtgatgtcaatcatgaatctaagagacataaaggcagtgat
tcaggtcatgaggggaaaagtagtaaaaggtcatcattaggtgatggagctagttcaagc
agtagtatgaatggagagaggatggatgagagagatcgagatagagagatgatgaaagaa
gaaaagtcctcaagaagagaatcagatgtgagggataaacctgcaaaggaaaagaaaatc
aagcgagaaccagtcgatgaggatagagatgatgacagacataaatccagcagctcaaga
aaaagaagaccttga
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integrated database retrieval system
