Lytechinus variegatus (green sea urchin): 121410975
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Entry
121410975 CDS
T11173
Name
(RefSeq) mRNA-decapping enzyme 1B-like
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121410975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121410975
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121410975
mRNA degradation factors
5'-3' decay
Decapping complex
121410975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
mRNA_decap_C
BNIP3
Motif
Other DBs
NCBI-GeneID:
121410975
NCBI-ProteinID:
XP_041459331
LinkDB
All DBs
Position
3:complement(38821040..38851262)
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AA seq
495 aa
AA seq
DB search
MIMNRLSLHNLTEPITKDLDYTLQEPFLLYKTAKAICGIWFYNRNDCIRFAELIQRLLAK
IRQEEKVIAPSATAATDIMSMLSKAQHEYKQGTKKKRSVSESGPSPIGPGGDGGGGGGVI
RPIPVKVSPGHVSKTEDQMSARGGAKPKTSPMGPRFQRSVSMQDTRTMAATTTSSVTTTA
GQGDGSKVIPVLQRLMSQGTEERPVITEKGQIHTLESLEKMHTNLPTEGSSAPAGKKPGV
QSLESIESLHIPSGGASDKRPSAAAAGTAGAPSSAESSHHLQRLLQRLQSGTDTAQAQSL
LGAAPSSTSAEPSPQKEVPEKVPSPSQQTDMNQALLDKLKSGTAVVPPVNLLKPSSATLT
PNLLVSQSASGTSDPSRAPPAMKQLFPAPKEARKTPSPPTTIQGVPSNLLTPELLRTRLT
SESALLSPLKLSGSVQAGQSQPVGKRSDPLLQRGPPTPLTKEQLADTLVHLLRTDDDFLS
KIHSAYTHSLQRLPP
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgattatgaacagactgagccttcataacctaactgaaccaatcaccaaggatttagac
tacaccctccaagaaccattcttactctacaagactgccaaagcgatctgtgggatctgg
ttttacaacaggaatgattgcattagatttgcagagttgattcaaagattactggccaaa
attcgacaagaagagaaagtcattgcaccaagcgcgactgcagccacagatatcatgtca
atgcttagcaaagcacagcatgaatataagcaaggtactaagaaaaagaggagtgtatca
gagagcggtccctctcctattggacctggtggtgatggtggtggtggaggtggagtcatc
agaccaatccctgttaaggtttcaccaggtcatgtgtctaaaacagaagatcagatgtca
gcgcgaggtggtgctaaacccaaaaccagtccgatgggtccaaggtttcagagatctgtc
agtatgcaagatacaagaaccatggctgccacaactacatctagtgtaacaaccactgct
ggccagggtgatggtagtaaggtgattccagtcctccagagattaatgtcacaaggcaca
gaagaaagacctgtcatcacagagaaaggacagatacacacattagagagtctggagaaa
atgcacacaaacttaccaacagagggcagtagtgctcctgcaggcaaaaaacctggagta
caaagtctagagagcatagagagcttacatataccttctggaggagctagcgacaagaga
ccttcagccgcagctgctggtacagctggggcgccctctagtgctgaatcatcacaccac
ctacaaagacttctccagcgcctccagagtggcacagacactgctcaagctcagagcctg
ttaggggctgcaccatcaagcacatcagctgaaccatcaccacagaaagaggtaccagag
aaggtaccctcaccatcacaacagactgatatgaatcaagcactgttagataagctgaag
agcgggacagcagtggtaccaccagtgaaccttttaaaaccatctagtgctaccctgaca
ccaaacctcttagtatcacagtctgcaagtggtacctcagatcccagtagagcaccgcct
gctatgaaacagctcttccctgctccaaaagaagcaagaaagaccccttcaccgccaacc
accatacaaggtgtaccctccaacctccttacaccagaactccttagaacacgtttaacc
agcgagtcagctctactctcaccccttaaactcagtggttcagtccaggctggccagagt
caacctgtaggcaagaggtctgatccattgttacagaggggtccaccaactccactcacc
aaggagcagttggctgacacattagttcatctcttgaggactgatgacgacttcttgagc
aagattcattctgcgtacacacactctcttcaacgtctacccccttaa
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