Lytechinus variegatus (green sea urchin): 121411377
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Entry
121411377 CDS
T11173
Name
(RefSeq) NACHT domain- and WD repeat-containing protein 1-like isoform X1
KO
K24734
NACHT domain- and WD repeat-containing protein
Organism
lvg Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lvg04990
]
121411377
Domain-containing proteins not elsewhere classified [BR:
lvg04990
]
Other domain-containing proteins
WD40 repeat (WDR) domain-containing proteins
121411377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
EIF3I
WDR55
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_HPS5
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WHD_NWD1
NACHT
NPHP3_N
Beta-prop_VPS8
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
Beta-prop_ACSF4
NBCH_WD40
DUF4062
PEP5_VPS11_N
Beta-prop_IFT122_1st
Beta-prop_NWD2_C
Beta-prop_IFT140_1st
RMC1_N
WDR90_beta-prop_4th
AAA_16
Beta-prop_RIG_2nd
AAA_22
Beta-prop_WDR75_2nd
Beta-prop_SCAP
NB-ARC
DUF7099
ATPase_2
Beta-prop_WDR75_1st
Lgl_C
nSTAND1
Lyase_8_N
Beta-prop_SPT8
Torsin
KAP_NTPase
ResIII
AAA_30
YobI-ATPase
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
121411377
NCBI-ProteinID:
XP_041459996
LinkDB
All DBs
Position
3:complement(54165466..54209642)
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AA seq
1568 aa
AA seq
DB search
MVVIKPKMADGEGDLKIKQSIYSGYTTVPELPPKVVRIFVSSTFVDAEAERNVLLNEVYP
TVWWWCKNNDLDFQLVDMRWGVRDEASTDHTTSQICLREIQKCQNVSMGPNFLFILGQRY
GYRPIPATIPASMYGILSEHVTNGDHINLLSSWYLRDDNTVPPVYVLQPIMEQVRKQWST
ISDQLVGVLRRAASDAGKAGQITEAEKQTFFMSVTEQEVREALDSKNPDDHCVGVLRTIT
DLEEHLGKTNTSKFCDLDSENKVQEDAKKLLGDLKDQYATKRLNEQNVHQFNVKWSPKGV
DPSRSDHRTYLDQFSNAVTNNTINLIKNAKTKYTHYELSKDELFIEVCNHAEFCRSKCIN
FHGCEDIIHAIFEKIKDEKFRKPIAIHGPSGSGKTSIMAMVQENAQKHLGHPCVVVSRFL
GTTSQSSTIINVILSIAKQICSAYQIYDSSELIERRPKELFPYFHSLLEKVSTTCDRHLI
IMLDSLDQLESAHSAHRCLWLPRNLPPKVSVVVSTLPDMYGILPKLRQLLGNEECFLSVE
ALSEGTGDEIMHTWMQGIGRAVTEEQKNILKKAFLKCPQPLFLKLLFEEARRWKSYTEVK
EEDLAVTVREAIWKLFERLERQFGYKLVSHALGYITAARSGLSHAELEDILSIDDEVLDE
IYQYWSPVDPTTVRIPSLLWTRLKYELEEYLVERQADGRAVMVLYHRQFKEAAFARYLND
PEIARQRYQVLADFFEARWSDKPKTLVLTQRHETLQAYRKVASQPLRFDKEFNQRKISEL
PYSLLFAKDIPRFVESTFGNFEFILTSMLANSTQYVIEELSWALTYPSILGSEVCTQLGL
LQDTLRLAKPTLEFKNNTQPVAIELLGRLSYFEGQYPDLIGRVIAGCRTWCQDTNKLLLI
PQMSFFPTPGGPMRTTLIGHHGDICDLSISDDGRYLATSDTEGAVYIWELGLDELLYSMK
DIQGKPVSHVTFSHDNRWFVGYIKESRAIQVWNMQSGDPSSRIVIDSKTDDPGKRDDHQT
CIILPKTSETIVFGAAKEVKIYLIQSGALQHTISVPSGDIKGLCLSSNDQYLHIITQNGH
YLTHSMMTYELLFDLRPHEGQVNCITNTQLGHVAIGYVDGTFCLIQPDENKNSKGVVAFT
ETVFEQKPVAGLCIKEDLSLLIVAADDNIYVWDYMKKFLQSTLEGHEESIENIEVATESS
LLVSGGYDDIIIVWDLISGTKVQILDGQQSDISLLKRHNNQLASASFNTPYIKLWDISPQ
YLSQHHHKFIDKKDIAAITKDLQYVVHQQFPEKPMISVWESDAMKSVHLKMREDETSRVT
CFATTDASLTAIVGCSDGCVVIADLRHKKVLNVLPGDKIAVASIAVRPDERYIAVAYADD
TVRVINIQSLKTQRQFNLDVKGNISNICLTLMDILVVASDAGLVYVKLTSSSDLVKLEGN
QSPINCLGVSPDERHVACGMEGANALVWDLQMTRVDLQIRAKSVQHLCFTKDNEYLATTS
NDKKVCLWRRSNGNQLLDIYIYSNLSCLAAIEGALIGTTQIGQVVAMEIKDRKKQALKRQ
TSRTCAIL
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatcaagccaaaaatggctgatggggaaggggatttgaagataaaacagtcg
atatactccggctacacaacggtacctgaactccctccaaaggttgtcaggatatttgtc
agctctacctttgttgatgctgaagcggagaggaatgtgttgttgaatgaagtatacccg
actgtttggtggtggtgtaagaacaatgatcttgacttccagctggttgatatgcgatgg
ggtgtccgggatgaagcatccactgatcacactacctcccagatctgtctcagggagata
cagaaatgccagaatgtctcgatggggccaaactttctgttcatccttggtcagcgttat
ggctatcgtcccataccagccactatccctgctagcatgtacggtattctcagtgaacat
gtcaccaatggggatcacatcaatcttctctcatcgtggtatctacgggatgataacacg
gttcctcccgtctatgttcttcaaccgatcatggagcaggtcaggaagcagtggtcaacc
atctccgatcagctcgtcggtgtactcaggagagcggcttccgatgccgggaaggctgga
cagatcactgaggctgagaagcaaacattttttatgtctgtgactgagcaagaagtgaga
gaggcacttgattccaagaatcctgatgaccactgtgtaggggtattgagaacgatcaca
gatctggaggagcatcttggaaaaacaaataccagcaagttctgtgatttagatagtgag
aacaaggtgcaggaggatgctaagaaacttctaggagatctcaaagaccaatatgcaaca
aaacgcttgaatgagcagaacgttcaccagttcaatgtaaagtggtctcccaagggtgtt
gacccctctcgttcagatcatagaacctaccttgatcaattctctaatgctgttacaaac
aataccatcaacctcatcaagaatgccaagacaaagtacacccactatgaactaagtaaa
gatgaactcttcatagaagtctgtaaccatgctgaattctgccgttccaagtgcatcaac
tttcacggctgtgaggacatcatccatgccatcttcgagaaaatcaaagatgagaagttc
aggaagcccattgcgatccatggtccatccggaagtgggaagacatccatcatggctatg
gtacaggagaatgctcagaagcatcttggacatccttgtgtggtggtgtccaggtttctt
ggtactacctctcaaagctcaaccattatcaatgtcatcctctccatagcaaagcagata
tgctctgcttatcaaatctatgacagcagtgagcttattgagaggaggccaaaggaactt
ttcccatattttcattcacttttggagaaagtctctactacctgtgacagacacctgatc
attatgcttgattctctagaccagcttgaaagtgcccatagcgctcatagatgtctatgg
ctaccaagaaaccttcctccaaaagtcagtgtagtggtgtccactcttcctgacatgtat
ggcattcttcccaagctgaggcagctgctgggcaatgaagaatgtttcctgtctgtggaa
gccctctcagaaggaactggagatgagatcatgcacacgtggatgcagggtattggaaga
gctgtgacagaagaacagaagaatatccttaagaaagcattcctgaagtgtcctcagcct
ctcttcttgaagctcctgtttgaagaggcacgtcgatggaagtcttatactgaggtcaag
gaagaggacttggctgtcactgtcagggaagctatatggaaactctttgagcgacttgag
aggcagtttggctataagctggtatcccatgcacttggttacattactgctgcacggagt
ggattatcccatgctgaactggaagacattctgtctatcgatgatgaggtgttggatgaa
atttaccagtactggtcccccgtggatcctaccaccgtacgcattccatccctgctctgg
acaaggcttaaatacgagcttgaggaataccttgttgaaagacaagctgatggaagggct
gtcatggtcctctatcacagacaattcaaagaagcagcctttgccagatatctgaatgat
cctgaaatagcaagacaacgctaccaagttttagctgatttctttgaggctcgatggagt
gataagccaaagaccctggtattgacgcagagacatgagaccttacaagcgtatcgtaaa
gtggcctctcaacctctcagatttgataaggaatttaaccagaggaagatcagtgagctc
ccgtacagtctactctttgccaaagatatcccaaggtttgttgagagcacttttggtaac
tttgagttcatcctcacatccatgctagccaactcaactcaatatgtgattgaagagttg
tcctgggccctcacatatcccagcatccttggatctgaggtttgcactcagcttggactc
ctacaagacacactcagacttgccaaacctactctagagtttaagaacaacacccagcct
gtagccatcgagcttcttggacgattgagctactttgaagggcagtaccctgatctgatt
ggtcgagtgatagcgggatgtagaacatggtgtcaggatactaacaagcttcttctcata
cctcagatgagcttcttccctacccctggaggaccaatgcgcaccactctcattgggcat
catggtgacatctgtgatctgtcaataagtgatgatggtcgttatctggcaacatcagat
acagagggagctgtgtacatttgggagctaggcttagatgaattgctctactctatgaaa
gatattcaaggcaagcctgtgagtcatgtgaccttctcacatgacaaccgatggtttgtg
ggatacatcaaggagtctagagccattcaggtgtggaacatgcagagtggtgatccttct
tcaaggattgtcattgacagtaagactgatgatccaggcaagagagatgatcaccagact
tgcatcatcttgcccaagacctctgagaccattgtgtttggtgcagcaaaggaagtcaag
atataccttatccagtctggtgccctgcaacacaccatcagtgtacccagtggtgacatc
aagggactttgtttgtcttcaaatgaccagtacctacacattattacacagaatggtcac
tacctcactcatagcatgatgacctatgaactgctctttgaccttcgccctcatgaaggt
caagttaactgcattacaaatacgcagcttggacatgtagcaattggatatgttgatgga
acgttttgcttaattcaaccagatgagaacaaaaatagcaagggagttgtggcttttaca
gaaacggtgtttgaacaaaagccagtagccggtctgtgcatcaaagaagatttgagcttg
ttgatagtagcggctgatgataacatctatgtctgggactacatgaagaagtttttacag
agtacattagaaggtcatgaagagtctattgagaacattgaggtcgcaactgagagcagc
cttctagtatctggaggttatgatgacatcatcatagtgtgggacttgatcagtgggacc
aaggttcaaatcttagatggccaacaaagtgatatctctctcctcaaacgacacaataac
caacttgcatctgcatccttcaacactccttacatcaagctatgggacatctctcctcaa
tacctgtcacaacaccatcataagtttattgataagaaagacatagcagcaataactaaa
gatcttcagtatgtggttcatcagcagttcccggagaaacctatgattagcgtctgggag
agtgatgctatgaaaagtgtgcatttaaagatgagagaagatgaaacaagcagggttacc
tgctttgcaacaactgacgcttccctaactgcgatcgtaggatgctcagatggatgtgta
gttattgcagatctgagacataagaaggtcttgaacgtccttccaggagacaaaattgca
gttgcttccatagcggtccgtccagatgaacgatacatagcagttgcgtatgcagatgat
acggtccgggtaataaacattcaatctctgaagactcagcggcagttcaaccttgatgtt
aaaggcaacatctccaacatctgcctgaccttgatggacattctggtggtagcaagtgat
gcaggacttgtctatgtgaaattgacatcatccagtgatcttgtgaagctagaagggaac
cagagtcctatcaattgtctaggagttagtcctgatgaacgccatgtggcttgcggaatg
gaaggtgccaacgcacttgtctgggatcttcagatgaccagagtggatttgcaaatcagg
gccaagtctgtccagcacctttgcttcaccaaagacaatgaataccttgcaacaacatct
aatgacaagaaagtatgcttgtggcgacgtagcaatgggaatcaacttcttgacatctac
atctactccaacctgtcctgtcttgcagctatagagggcgctctgataggaactacacag
attggtcaagtggttgccatggaaatcaaggatcggaaaaagcaagcattgaagaggcag
acctccaggacatgtgccatactgtaa
DBGET
integrated database retrieval system
