Lytechinus variegatus (green sea urchin): 121412067
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Entry
121412067 CDS
T11173
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC2-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121412067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lvg03021
]
121412067
03036 Chromosome and associated proteins [BR:
lvg03036
]
121412067
Transcription machinery [BR:
lvg03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121412067
Chromosome and associated proteins [BR:
lvg03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121412067
PBAF complex
121412067
GBAF(ncBAF) complex
121412067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
SWIRM
Motif
Other DBs
NCBI-GeneID:
121412067
NCBI-ProteinID:
XP_041460912
LinkDB
All DBs
Position
3:complement(53637136..53676289)
Genome browser
AA seq
1202 aa
AA seq
DB search
MAIRKKDGGADFKFFESADIASQLDNVKSWLQRNCKRWIQAEPPTNKSIASMLAQLIQFQ
EDAFGRHVSNPPLTRVPQKVFLDFKSGGGLCNVLMAVYRFKSEQGWRRFDFHSPSRMDRN
VEMFMQISKTLIQNKCFVLPQVCIHSSVEPKLAAKLTDIVKRHQGTVSEDPEVATHLVFS
PPIPLAEGEEYLRPIGRKERSTLVHWWYYPDSYDTWVPSSEVHGDPEHLATMDGPWEVNA
KWILDLDEFNEWMNEEDYEMQLDGEDRVAITPAIGRTRRRAYPARPIADDGSTDGDHERG
MNKRGGPGKKRKRSPSPPPDKRRKKPGRSPAPGAKKRGAKDEEEDLTKDLENPPSVPSLQ
EVELPKVVPGSRSGKDNEMQPVKSGTMMDLDENKEEPMDTNKADESQSSSIVNGEEKDRN
AAPDIHEDNVTEQTHHIVVPSYSAWFDYNRVHAFLEQWGLVNYQVDADNKATPMGPPPTS
HFHVLADTPSGLQPVQASKSGSGAKQSNSTQMMNMTDKDGAKDTKSTDLTNFGLRQDMYA
TKKSQISKAKGTSSSNIKEWTDQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILQFLR
LPIEDPYLHDGPSALGPLAYQPIPFSQSGNPLMSTVAFLASAVDPRVASAAAKAAIEEFA
KMKDEVPTTLVDVHIRRVEDAAEKGLLDNKYLLGVSGIAGTNEQQEGETKDQEQQQQQKP
GEGGDKEWTATATEGDKEEDSKDQVPIVKEENKSPAKPPSQDETPSSTEGAAKEGEDQAQ
PMDTSDGTTAPPAPTQLQEQQPSQPPKELTPPAIEIKKESGETEGMTDGEEGEKKDGESG
EGAVEKMDAGGDAGEKKEGEEAKEEEAKEKPDKVKKFEETIDTGNLATAAASALAAAAVK
AKHLAAMEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQ
QFHQEQLRVAEMRARQHAQAMAAMSQAQSSGFTQQPSSAAPQPSSMTQVTTSTATSVTSA
GAVPPQQPSQQPGVQPSVQPQTQQPAGSGSMPTGQSQDASGEAVPATGQEQGNSNQPPQL
APSVEAGAPVSDAPGVPPSQDAPPPESSDKPMETTSGSDVKDSEEAMDTSDVPSKPDGST
PSSESKETTPPSGEISAMETDSKEAPPTSTEAEGEVKPPSSDGGDGKKPEQLETSSEPKP
SS
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atggctatccgtaagaaggacggcggtgctgatttcaagttttttgagtccgctgacatt
gcttcccagcttgataatgtgaaatcatggcttcaaagaaattgcaagaggtggatccag
gctgagcctcccaccaataagagcattgcaagtatgcttgctcagcttatacagttccag
gaagatgcctttgggagacatgtcagcaaccctcctctgaccagagtacctcaaaaagtc
tttctggatttcaagtcaggagggggtctttgcaatgttctcatggctgtataccgattc
aagagtgaacagggatggagacgatttgacttccactccccgtcacgcatggaccgcaac
gtagagatgttcatgcagatctccaagacgctgatccagaacaagtgttttgtcttgccc
caggtctgcatccacagcagtgtggagccaaagcttgccgctaagctcactgatattgta
aagagacaccagggtacagtttctgaagaccctgaagtagcgactcaccttgtattttct
cctccaatacctctggctgaaggtgaggagtacctgagacccattggacgtaaagagcgc
tccacgctggtgcattggtggtactacccagacagttacgatacctgggtaccatcctca
gaagtacatggtgaccctgaacaccttgctacaatggatggaccctgggaggtgaatgcc
aaatggatcttagatctggatgagttcaacgaatggatgaatgaagaagattatgagatg
caattagacggtgaggatagagttgccatcacccctgctattggacgcacccggagacga
gcatacccagcaaggcccattgcagatgatggttctaccgatggtgaccatgagagaggt
atgaacaagcgagggggccctggtaagaaaaggaagcgatcgccgtctccaccacctgac
aaacgaagaaagaaacctggcaggagcccagcaccaggagccaagaaacgtggagccaaa
gatgaagaggaagatctaacaaaagaccttgagaaccctccctctgtcccatcgctgcag
gaggtggagctaccaaaagttgttccaggcagcaggagtggtaaagacaatgaaatgcaa
cctgtcaaaagtggaacaatgatggatctagatgaaaacaaggaagagcccatggacacc
aataaggctgatgaatcccagagcagttccattgtcaatggagaagagaaagacaggaat
gctgcacctgatatccatgaagataatgttacagagcagacccatcacatcgtggtacca
agctattctgcatggtttgactacaacagggtacatgcattcctggagcagtggggtttg
gtcaattaccaagtagatgctgacaacaaggccacgcccatgggacctcctcctacctca
cacttccatgttctggccgacaccccttcaggcctgcagccggtacaggccagcaagtca
ggaagtggagcaaagcaatctaactcaactcagatgatgaacatgacagataaggatggc
gccaaggatacaaagagcacagacctgacaaactttggacttagacaagacatgtatgca
accaagaagtctcaaatatcaaaggccaagggaacatcatccagtaacatcaaggaatgg
acagaccaagagaccctgctcttacttgaagcccttgagatgtacaaggatgattggaac
aaggtctcagagcatgtcggtagcagaacccaagatgagtgtattctccagttcctcaga
cttcctatcgaagatccttatcttcatgatggtccatctgccctaggtcctcttgcctac
caacccatcccattcagtcagtcagggaatcccttgatgagtactgtggcattccttgct
tcagccgtagaccctagagtggcaagtgctgcagcaaaggcagctatcgaggagtttgcc
aagatgaaagacgaggtgcccaccaccctggtagacgtccacatccgcagggtcgaggat
gcagcagagaagggtctcctggacaacaagtacctcctgggtgtgagtggcatcgcaggt
accaacgagcagcaggagggggagaccaaggatcaggagcagcagcagcaacagaagcca
ggagaaggtggagacaaggagtggaccgccactgctacggaaggagacaaggaggaggac
agcaaggatcaggtgcctatcgtgaaagaagagaacaaatccccggccaagccgccttcc
caggatgagactccatcgtcaacagagggcgctgcaaaagaaggcgaagaccaagcacag
ccgatggacaccagcgatggcaccacggcaccacccgccccaacacagcttcaagagcag
caaccttcccaaccaccgaaggaactgacaccaccagccatagagatcaagaaggaatcc
ggagagacggaaggaatgactgatggagaggagggagagaagaaggatggagagagcgga
gaaggagcagtagagaagatggatgcaggtggagatgctggtgaaaagaaagaaggagaa
gaggcaaaggaagaggaggccaaagagaaaccagacaaagtgaaaaagtttgaagagacc
atagacactggaaaccttgcaactgctgctgcttctgcactggcggctgctgcagtcaaa
gcaaaacaccttgctgcaatggaagagagaaagatcaagagcttagtagccctcctggtg
gagacacagatgaagaagctggagatcaagctccgtcattttgaggagctggagacaatc
atggacagggagagagaagctttggagtatcagagacagcaacttctggccgatcgtcag
cagttccatcaggagcagcttagagtagccgagatgagggcacgccagcacgcccaggct
atggcagccatgtcccaggcacagtcatcaggctttactcaacagccatcctcggcagca
ccgcaacctagtagcatgacacaggtgaccacgtcaacggcaacatcggtaacgtcagca
ggagctgtgccaccacaacaacctagtcagcaacccggtgtccaaccatctgtgcaacca
caaacacagcaaccagcaggatctggtagcatgccaactgggcagtcccaggatgcatcg
ggggaagcagtgcccgctactggtcaagaacaaggcaactccaatcaacctccccaacta
gctccatcagttgaagctggggctcctgtttctgatgcccctggtgtgccaccctcccaa
gatgccccacccccagagtcaagtgacaaacctatggagactaccagtggcagtgatgta
aaggattctgaagaagcaatggataccagtgatgtacccagcaaaccagatggaagtacc
ccctctagtgagagtaaagaaacaaccccaccatctggtgagatatctgcaatggaaaca
gatagcaaggaagccccacccaccagcacagaagctgagggtgaagtcaaaccaccaagc
agtgatgggggagacgggaagaaaccagagcaattggagaccagttcagaacccaaaccc
tcctcgtaa
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integrated database retrieval system
