Lytechinus variegatus (green sea urchin): 121412900
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Entry
121412900 CDS
T11173
Name
(RefSeq) E3 ubiquitin-protein ligase parkin-like
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg04120
Ubiquitin mediated proteolysis
lvg04137
Mitophagy - animal
lvg04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121412900
04120 Ubiquitin mediated proteolysis
121412900
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
121412900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lvg04131
]
121412900
04121 Ubiquitin system [BR:
lvg04121
]
121412900
03029 Mitochondrial biogenesis [BR:
lvg03029
]
121412900
Enzymes [BR:
lvg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
121412900
Membrane trafficking [BR:
lvg04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
121412900
Aggrephagy
Other aggrephagy associated proteins
121412900
Xenophagy
Other xenophagy associated proteins
121412900
Ubiquitin system [BR:
lvg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
121412900
Mitochondrial biogenesis [BR:
lvg03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
121412900
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
IBR_1
IBR
ubiquitin
Rad60-SLD
Rad60-SLD_2
DUF3090
Motif
Other DBs
NCBI-GeneID:
121412900
NCBI-ProteinID:
XP_041461596
LinkDB
All DBs
Position
4:24007004..24027682
Genome browser
AA seq
502 aa
AA seq
DB search
MSQFVWPAVVIACIAKRRYNLFCHFYVIYKSRFQRVIQSKMDQFLISVKLIQSPRPRLGK
FSENVGLAEMRMPVHATQSGAEIRDEVARISGQSPADIRLIFAGKLITDVQTMEDLRICE
NTVIHAVPSQRIQHCETIHDTDVEQPPVLGLLESRIVDKDGNIPDLDPGSSLRPGFYVYC
KSHCVSIQPGKLRVCCQTCKDPAFIVREDPVCWDDVILSDRISGSCLTPGCQGDKAEFFF
KCSSHIASGNDQLTVLPLIRTNTRRVMCITCADVLISVLVFPCSAAHVMCLDCFSQYCRL
CLNERRFIQSPQLGYTLPCPAGCEDSLIKDSHHFLVLGKEQYARYKRFGTEEYLLSEGGV
LCPSPGCGAGILLESGEERRVECLQEEGFGCGFVFCRNCHEAYHDGECGQRIEEPQSPTA
LGSEVNSERERQARRENEESRRIIAETSKPCPNCKVPVERNGGCMHMVCSQAQCKYEWCW
ICGIGWNMDCLEDHWFGTGFLL
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagttcgtgtggccggccgtggtgattgcgtgcattgccaaacggcgatataat
ttgttttgtcacttttatgtgatttacaagtcaagatttcaacgtgtcattcaatcaaag
atggaccagttccttatatcagtcaagctcatacagtctccaaggccaaggttgggtaaa
ttttccgaaaatgtaggcctagcagaaatgaggatgcctgttcacgcgacgcaaagtggg
gccgagatacgagacgaggttgctcgcatatcgggacagtcccccgcagacattcgtctg
atattcgctggaaagttgatcactgatgtgcaaacaatggaggatcttaggatatgtgag
aacactgtgatccatgctgtaccttctcagagaattcaacattgcgagaccattcatgac
actgacgtggaacaaccaccggtgcttggtctcttagaatcaagaattgtggacaaagat
ggcaatatacctgatcttgaccctgggtcatctcttcgacctggcttctatgtttattgc
aagagtcattgtgtctcaatacaacctggcaagctgagggtgtgctgtcaaacctgtaag
gatcctgctttcattgtcagagaggatcctgtatgctgggatgatgtcattctgtccgat
aggatatcaggaagttgccttactccaggttgccaaggtgataaagctgaatttttcttc
aagtgttcatcacacatagcatcagggaatgatcaactcacagtacttcctctcatacgg
accaacaccagaagggttatgtgcatcacatgtgcagatgtcttaatatctgttttggtc
tttccatgttcagctgctcatgtgatgtgtttggattgttttagccaatactgtaggttg
tgtttaaatgagaggagatttattcagagtcctcagctaggatacacattaccatgccca
gctggatgtgaggattctctcatcaaggactcacatcatttcttggtgctgggaaaggaa
cagtatgcccgatacaagagatttggtaccgaggagtatcttctaagtgagggcggggtc
ctgtgcccctccccagggtgtggtgctggtatactactagaatcaggagaggagaggaga
gtggaatgcctgcaggaggaaggctttggatgtgggtttgtcttctgccggaactgccat
gaagcctaccacgatggggagtgtggacagaggatagaagagcctcagagtccgacagca
ttggggtcagaggtcaacagtgagagggagcgacaagcaagacgggagaatgaagagagt
agaagaatcatagcagagaccagtaaaccttgccctaactgcaaagtgcctgtagaaaga
aatggtggatgcatgcacatggtctgcagtcaagcccaatgcaagtatgagtggtgttgg
atatgcggaattggctggaacatggactgcctagaagatcattggtttggtacagggttt
cttttgtga
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