Lytechinus variegatus (green sea urchin): 121413916
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Entry
121413916 CDS
T11173
Name
(RefSeq) probable Werner syndrome ATP-dependent helicase homolog 1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03440
Homologous recombination
lvg03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121413916
03460 Fanconi anemia pathway
121413916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lvg03032
]
121413916
03400 DNA repair and recombination proteins [BR:
lvg03400
]
121413916
Enzymes [BR:
lvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
121413916
DNA replication proteins [BR:
lvg03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
121413916
DNA repair and recombination proteins [BR:
lvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
121413916
Bloom's syndrome complex (BTR)
121413916
FA (Fanconi anemia) pathway
121413916
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
Helicase_C_2
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121413916
NCBI-ProteinID:
XP_041462853
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All DBs
Position
4:complement(34956815..34960547)
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AA seq
582 aa
AA seq
DB search
MGTRPSLQDALLHASGKLSIKFRKQQEEALSSFLLGHDLFVSLPTGFGKSVVFRGAPLCM
DFLRGQDVGFNSLAIVVMPLKSLIRDQLDIARKSGISAVDLSGGITDKIREELANGCHSL
ILSSPEVLTGDSGRDLITISTVRGRLCGLFVDESHCVKKWGQSTGTTKVFRESYNKIGEL
RSILPPVPVVALTATATKEVRRSIVQSLSLKNYTTISASPDRSNIKHSFMKSSSNSPDTN
LAFLVKELQDRGRDCDRFLVYCQSRKIVSEVYSMFMYQLPPTHKAYVQMYHTNSEDDVQQ
HIVKDFGDSKGMIRVLVATIAFGMGVDVQGCHNVIMYGVPSHIDDYVQMSGRVGRDGKKS
LSICMKYPGDTKHGTSDEIKRYINGDSCRRAAIVDCFGEAQTSDVVHVLHECCDICALKC
MCAGSTCDTPCYRLEHLAYESICREKKLSEFDVSVPSEEEHAKLERSLKQYRDSLLGSPE
SLYSGPDIACGLPSSVIDMILLDINVVIPKVEFLRRYRFGNKEIGEECWRIYSGSLHRGS
IAGDENDVPATCTNMYDSDEWSGDEYDEIILDDYHIDSDSDN
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgggtaccagacccagtttacaggacgctttacttcatgcctcaggaaaactttccatc
aaattcaggaagcaacaggaagaggcattatcttcatttttgttaggacacgatctgttc
gttagcttgccaacaggctttggaaagagtgtagttttccgtggtgctcctctatgcatg
gactttcttcgtggtcaagatgtcggatttaattcacttgccatagtggttatgcctcta
aaatcacttatccgagaccaacttgatattgcgaggaaaagtggtatttcagctgttgat
ttgagtggaggaatcaccgacaaaatcagggaagagctagctaatggttgccattccttg
atactctcaagccctgaagttttgacaggagactctggaagggacctaatcacaataagc
actgtgaggggtcggctatgtggactctttgtggatgaaagccactgtgtgaagaaatgg
ggtcagtcaactgggacaaccaaggtcttcagagagagctacaacaagattggtgagcta
cgctcaattcttccaccagttccagtcgttgctttgacagctaccgcaaccaaagaggtt
aggaggagtatcgtccaatccttaagtttgaaaaactacaccacaatcagtgcatcgcca
gaccggagtaacatcaaacattcatttatgaaatcttcatccaattcaccagataccaat
ctggcttttctcgtcaaagagctacaagatagaggaagagactgtgaccgttttcttgtc
tactgccagtcaaggaagattgtttcggaagtttattccatgttcatgtatcagctgccc
cccacacacaaggcttatgtacagatgtatcacaccaacagcgaggatgacgtccagcaa
catatcgtgaaggacttcggagacagcaagggaatgattagggtgcttgtggcaacgatt
gcttttggcatgggtgtggacgtacaaggctgtcacaacgtcatcatgtatggagtgcca
agtcatatcgatgattatgtacagatgtctgggagagtcgggagagatgggaagaagagc
ttgagtatttgcatgaagtatccaggagacacaaagcatggtacctcagatgaaatcaag
agatacatcaatggtgattcctgccgacgagcagcgattgtagactgtttcggagaagct
caaacttctgatgttgtacatgtattacatgagtgttgcgacatttgtgctttgaagtgc
atgtgtgctgggagtacatgtgacacaccatgctatcgattggaacatctggcatacgag
tcaatctgcagggagaaaaaactgagtgaatttgatgtgtctgtcccatcagaggaggag
catgctaagttggagcgttcattaaagcaatacagagattctctactgggaagtcctgaa
tccctgtacagtggaccagatatagcttgtggccttccttcatcagttattgacatgatt
ttgctcgatatcaatgttgttatccctaaagtagagttcctgagaagatacaggtttggg
aataaagaaataggagaggaatgttggaggatttactcaggttctttacatcgcggttca
attgcaggtgatgaaaatgatgttccagccacttgcacaaacatgtatgattctgatgaa
tggtctggggatgaatatgatgagattattttagacgactatcacatcgacagtgacagt
gacaattga
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