Lytechinus variegatus (green sea urchin): 121414028
Help
Entry
121414028 CDS
T11173
Name
(RefSeq) cleavage stimulation factor subunit 2-like
KO
K14407
cleavage stimulation factor subunit 2
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121414028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121414028
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
121414028
U7-dependent histone pre-mRNA processing factors
121414028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
Motif
Other DBs
NCBI-GeneID:
121414028
NCBI-ProteinID:
XP_041463001
LinkDB
All DBs
Position
4:complement(39693853..39709884)
Genome browser
AA seq
682 aa
AA seq
DB search
MSAADRSIRSVFVGNIPYEITEEKLKDIFSEVGPVISFRLVFDRDTGKPKGYGFCEYQDQ
ETALSAMRNLNGYELSGRSLRVDNATSEKNREELKTALQQSQPPPESPYGDAVAPQEAPE
AISRAVASLPPEQMYEVMKQMKIVIQNNPVEARNMLLQNPQLAYALLQAQVVMRIVDPNV
AMTLLHRQTDAPQPLFPPESNQGPGPHQGPGPQGNQQMMGGNQGMGMGGPRPDHQMGPGG
PRGMNPNMGPGMNQGPMGPRGMGPQGMGHQDMGRGGMGPQDRNMQGGMQRGGMGPGEMIR
SGMGPGEMNRGGMGPGEMNRSGMGPGEMNRGGMGPGEMNRGGMGPGEMNRGGMGPGEMNR
GGMGPGEMNRGGMGPGEMNRGGMGPGEINRGGMGPGEMNRGGMGPGDMNRGGMGQGEMGR
GGMGPEDMGHQGRGPGEMNRGGMGPGEMNRGGMGPGDMNRGSMGQQEMGMGGPRPGMGMN
EMGRGGGPDMNRGMGPGQGPQGRMHGGMEQGRMNMGPGGGGPGMSPNMMSQEMQMTRGGV
GPGPRGGPSEVHDPRRQDPRGPGARADGPGGAGGFERGDPHGMGSMRPGGMAAGGGGGGD
PRMADPRAADRSALSASNLSQLAQNINLSQTQPTQQDQEKAALIMQVLQLSPEQINLLPA
EQRASIMVLKEQISRSQGGLPS
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctgccgatagatccatccgctctgtctttgtgggtaatattccatatgagata
acggaagagaaattgaaagatatcttctcagaggttggcccggtgattagcttccgtctg
gtctttgatcgggacaccggcaaacccaagggatatgggttctgcgagtaccaggatcaa
gagacggctctctctgcgatgaggaacctgaatggctatgagctcagtgggaggagtctt
cgggtggataatgctaccagtgagaaaaacagggaggagctaaaaactgcactgcagcag
agtcagcctccccctgagtctccctatggtgatgctgtagcaccccaggaagcccctgaa
gccatctctagagctgtggctagccttccaccagagcagatgtacgaggtcatgaaacaa
atgaagattgtgattcagaacaaccctgttgaggctcgtaacatgctcctacagaaccct
caacttgcctatgctctgcttcaggcccaggtcgtcatgcgcatcgtggacccaaatgtt
gccatgaccttgcttcacagacagacagatgcaccccaaccactgttccctcctgaatct
aatcaaggtcctggacctcaccaaggaccaggtcctcagggtaaccagcaaatgatggga
gggaaccaaggaatgggtatgggtggaccaagacctgatcatcagatgggtccaggtggg
ccaagaggaatgaatcctaatatgggcccaggaatgaatcaggggcccatgggaccacga
gggatgggtccgcaagggatgggacaccaagatatgggcaggggtggtatgggcccacag
gataggaacatgcagggaggtatgcagaggggtggcatgggcccaggagaaatgattcgg
agtggcatgggtcctggagagatgaaccgtggtggcatgggcccaggagagatgaatcgg
agcggaatgggcccgggtgaaatgaatcggggtggcatgggaccaggggaaatgaacagg
ggaggtatgggccctggagaaatgaacaggggcggtatgggcccaggtgaaatgaatagg
ggtggcatgggccctggagaaatgaacaggggtggtatgggccctggagaaatgaacagg
ggcggtatgggccctggagaaataaacaggggcggtatgggccctggagaaatgaataga
ggcggtatgggcccaggggacatgaatcgtggtggaatgggacaaggagaaatgggccgt
ggaggaatgggccccgaagacatgggccaccaaggcaggggtccaggcgaaatgaaccgc
ggtggcatgggtccgggtgaaatgaaccggggcggcatgggtcctggcgatatgaatcgc
ggcagcatgggccaacaggaaatgggcatgggaggtcctaggccagggatgggtatgaat
gagatgggtcgagggggtgggccggatatgaacaggggtatgggtcctgggcagggtcca
caaggaaggatgcatggaggaatggagcagggtcggatgaacatgggtccaggtggagga
ggacctggaatgagcccaaacatgatgagtcaagaaatgcagatgacccgtggtggtgtg
ggaccaggcccaagaggtggaccatcagaggtccatgatccccggagacaggaccccagg
ggaccaggagcacgagccgatggaccgggcggagcagggggctttgagaggggtgacccc
catggcatggggagcatgaggcccggtggaatggcagcaggaggtggtggtggtggtgac
ccacgcatggctgacccaagagcagctgatcgctcagccctcagtgcatctaatctttct
cagcttgcccagaatatcaacctatcccaaacacagcctactcaacaagatcaagaaaag
gccgccctgatcatgcaagtgttacagctttcacctgagcagatcaaccttcttccggca
gagcagagggctagtatcatggtactcaaagaacagatctcgcgtagccagggagggttg
ccatcttag
DBGET
integrated database retrieval system
