Lytechinus variegatus (green sea urchin): 121415246
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Entry
121415246 CDS
T11173
Name
(RefSeq) probable ATP-dependent RNA helicase DDX49
KO
K14778
ATP-dependent RNA helicase DDX49/DBP8 [EC:
5.6.2.7
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lvg03009
]
121415246
Enzymes [BR:
lvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121415246
Ribosome biogenesis [BR:
lvg03009
]
Eukaryotic type
90S particles
Helicases
121415246
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Phage_integrase
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121415246
NCBI-ProteinID:
XP_041464363
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All DBs
Position
5:10387250..10410784
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AA seq
482 aa
AA seq
DB search
MADFEVEKGKRLSFAGLGLHDWLVRQCEAVGIKQPTPIQHNCIPAILRGSDCIGCAKTGS
GKTAAFALPILQKLSEDPYGVFGLVVTPTRELGIQIAEQFRVLGKPIGLRVAVVIGGIDM
VEQGLELSKKPHIVIATPGRLADHIKSTTTFDLHAIKFLVLDEADRLLEGNFGPDLEVIF
DFLPAKRQTLLFSATITDTMKELQKMSMNKPYFWHSKAPVATVEQLDQRYVLMPAQVKDA
YLMYIISEFTEKNKDHSVIIFTSTCKYCHVLSIMLRNLGMPCATLHSLVKQKTRIASLAM
FKSNHVRILVATDLASRGLDIPMVQMVINHNVPTSPKDYIHRVGRTARAGRGGMSITMVT
QFDVKLVQAIEKTINAKMTEYKVPEKKVLPILNEVALAKSKAEMKLEELDFGERKAIHKR
KQLILEGKDPDEEDRKRAGPSQKKTKQHQKEPDQSRMVSQRKHQSKGKNKLKGKPSKEKK
SR
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcagattttgaagtggaaaaggggaaaagattatcctttgcaggactcggacttcac
gactggcttgtcagacagtgtgaagcagtcggaatcaaacaaccaacacccattcaacac
aactgcattccagcaattttgagaggtagtgattgcattggctgtgccaagacggggagc
ggtaagacagctgcttttgccttgcctattcttcagaaactgagtgaagacccttatgga
gtctttggacttgttgtaaccccaacaagggaactgggaatccagatcgcagaacagttc
agagtgctaggaaagccaataggattgagagtagccgtagttattggtggaatagatatg
gtcgagcagggactggagctgtccaagaaacctcacattgtcatagcaacccctgggcgt
ctagctgaccacattaagagtacaacgacctttgacctccatgccatcaagtttctggtc
ttggatgaagcagatcgcttattggaggggaacttcggtccagatttggaggtcatcttt
gatttcttgccagctaaaagacagacattgctcttcagtgccaccattacagataccatg
aaggagctacagaagatgtccatgaataaaccttacttctggcattccaaagcaccagtg
gctaccgttgagcagctagaccaacgctatgtgctgatgcccgctcaggtcaaagatgcg
tatctcatgtatatcatctcagaattcactgagaagaacaaggatcattctgttattatc
ttcacaagtacatgcaaatattgtcatgtgctatctattatgctgaggaacctcggtatg
ccgtgtgctactctacattcacttgttaagcagaaaactaggatagcgtcgttagccatg
ttcaagtccaatcatgtgaggatcctggttgcgactgatctggccagtagagggcttgat
atccccatggttcagatggtcatcaatcataacgtacctacgtctcctaaagactacatc
cacagggtcggcaggactgcaagagcaggtcgtggaggtatgtctattaccatggtaaca
caatttgatgtcaagctcgtccaagcgatagaaaagaccatcaatgccaagatgacagag
tataaagtcccagagaagaaggtcctccctattctcaatgaagttgctctggcaaagagt
aaagctgaaatgaaactggaagagttggactttggggagcggaaagctatccacaaaaga
aaacaactcatcctggaaggaaaggatcctgatgaagaggatagaaagagagcaggaccg
agtcagaagaagacaaaacagcatcaaaaagaacctgaccaatcacggatggtatctcaa
aggaaacaccaatcaaaaggaaaaaacaaactgaaaggaaaaccatcaaaagaaaagaag
tctagatag
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