Lytechinus variegatus (green sea urchin): 121415549
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Entry
121415549 CDS
T11173
Name
(RefSeq) nuclear cap-binding protein subunit 1-like isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03013
Nucleocytoplasmic transport
lvg03015
mRNA surveillance pathway
lvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121415549
09122 Translation
03013 Nucleocytoplasmic transport
121415549
03015 mRNA surveillance pathway
121415549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121415549
03041 Spliceosome [BR:
lvg03041
]
121415549
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
121415549
Spliceosome [BR:
lvg03041
]
Common components
Common spliceosomal components
Cap binding complex
121415549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
DUF5635
LPD11
Motif
Other DBs
NCBI-GeneID:
121415549
NCBI-ProteinID:
XP_041464728
LinkDB
All DBs
Position
5:complement(15293143..15314931)
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AA seq
796 aa
AA seq
DB search
MSGSRRRRYRDDDEDMDTGHRSKRRRPDNAQIEERLESLITRVGEKSTSSLESNLEGLSG
VLEADLPNYKAKIIKILCECAVALPEKITVYTTLVGLLNAKNFSFGDDFIEVLGKSMKDF
MKNNEWSKARFVVRFFADLVNCHVIDVASLLSLYENFMAVTEEPDIPQVRSDWFVYSILS
SLPWVGCSLDEKKGEELSKLMKSIEGYLGKRKKDHVPFLRVWHGENPHEQQDYLDSLWQQ
VSKLRRDQWLEKIIMRPYMAFHSILSESSVHNLPPFTPPPHIPDLTYPIPKVVFRMFDPT
DAPDGPPLPGALSIERYLVEDQISSLITTYYKDRKECAAQLLNYHAKKQVPLNYVIVEVM
FGQLFNLPQSPRIHVFYMSLFLELCKLQPGSLPQVLAQASEMLYERLEHMNLHSSDRFVN
WFAHHLSNFQFRWSWEEWTDCLNVDVDLPKPKFVIEVLAKCLRLSYHQRIVESVPETYAP
LLPNPPDPIYKYGQEGADSLPGYIVAQNLTDMIKKKASPEVIIEVLKDTPNPKDVDGMED
ETSFNALKIDVFVQVLLHLGSKSFSHSFSALAKFLPVLKELAVNEESQIYILRVIKDIWR
NHSQRIAVLVDKLLRTRVITCPAVANWLFSSYMSSSFTRMFVWEILHSTINTMNKHVKAC
ETELEEARQSAKRPDDVDMESDDEDRYDISKADSETKIDLLQEKLEGAQSEEKKLFLIIF
QRFVMVLGEHMVSSENKEEDFRTPWFIHAIQRLQQIFLVHYHQVVKYTTTLENLVFTTDT
DPTILEVFTAFRSLHS
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaagtagaaggcggaggtaccgtgatgatgatgaagatatggatactggccat
aggtcaaaacgacgaaggccagacaatgcacagattgaagaaagattggaatctttgatc
accagagttggagagaagagtacttcatcgcttgagagtaatttggagggactttcaggg
gtgttagaggccgatctacccaactacaaagcaaagattatcaaaatcttgtgcgaatgc
gctgttgcacttccagagaagatcactgtctacaccacactcgtgggtcttctaaatgcc
aaaaacttcagctttggtgatgattttattgaagtgctgggaaagagcatgaaagacttc
atgaagaacaacgaatggagtaaagcaaggtttgttgtgcgcttctttgctgatcttgta
aactgccatgtcatagatgtggcctcactcctttcgctctatgagaactttatggcagtc
accgaggagccagacatccctcaagtgcgctctgattggtttgtctactctatcttgagc
agtttaccatgggttggatgttcattggatgagaagaaaggagaagaactcagcaaacta
atgaagtccattgaaggctatttaggtaaaaggaaaaaggatcacgttcctttcctccgg
gtttggcatggcgagaatccacacgaacaacaagattatttggacagtctatggcagcag
gtcagtaaactccgcagggaccagtggcttgagaagatcatcatgcgcccctacatggcc
ttccactccatcctgtcggaatcatcagtgcacaacttgccccccttcacaccccctcct
cacatcccagacctgacatatcccatccccaaggtggtcttcaggatgtttgatccaaca
gatgctccagatggaccacctctgccaggtgcactttccatcgagcgatacttagtggag
gatcagatcagttcactcattaccacttactacaaagataggaaagaatgtgctgctcag
ttgttgaactaccatgccaagaagcaagtacctctgaattatgtcattgtggaggtgatg
tttggccaactcttcaacctccctcagtctccacggatccatgtgttctacatgtctctc
ttcctggagctatgcaagctccagcctggatcccttccacaagttcttgctcaagcctct
gagatgctctatgagagattggagcacatgaacctccattcttcagatagatttgtgaac
tggtttgcacatcatctcagtaacttccagttcagatggagttgggaagagtggactgat
tgtctgaatgttgatgttgatctgccaaagcctaagtttgtgattgaggtgctagctaaa
tgtctgagactgtcgtatcatcagcgcattgttgagagtgttcctgagacctatgctcct
ttattacccaacccacctgaccctatttataagtatggccaggaaggagcagactctcta
ccaggatacattgttgcacagaacctgactgatatgatcaagaagaaagcttcacctgag
gtcatcattgaggttctcaaagacacacctaatcctaaagatgttgatggcatggaagac
gagactagcttcaatgctttgaagattgatgtattcgttcaggtactccttcatcttggc
tctaaatccttcagtcattccttcagtgcacttgccaaatttctacctgtgttgaaagag
cttgcagtgaatgaggagagtcagatctatatcttaagggttatcaaagacatctggagg
aatcactcacagaggattgccgtcctagtggacaagctcctgcgtacccgtgtgattact
tgtcccgcggtggctaactggttgttctcttcctacatgtcatcgagcttcaccaggatg
ttcgtatgggagatccttcattctaccatcaacaccatgaacaaacacgtcaaggcatgt
gagacagagcttgaggaggctagacagagtgccaagagacctgatgatgtggatatggag
agtgatgatgaagatagatatgacatctctaaggctgatagtgagactaagattgatcta
ctccaagagaaactagaaggagcacagagtgaagaaaagaaactcttcctcatcatattt
cagcgttttgtgatggtgttgggagagcacatggtatccagtgagaacaaggaagaagat
ttccgcacaccttggttcatccatgctatacagaggttacaacaaatatttcttgtgcat
taccatcaggtcgtgaagtacactacaacccttgagaaccttgtttttacgaccgacacc
gacccaactattctggaggtctttacagctttccgctctctccactcatga
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