Lytechinus variegatus (green sea urchin): 121415776
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Entry
121415776 CDS
T11173
Name
(RefSeq) protein SMG5-like
KO
K11125
protein SMG5
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121415776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121415776
03032 DNA replication proteins [BR:
lvg03032
]
121415776
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
121415776
mRNA cycle factors
Common to processing body (P body) and stress granule
121415776
DNA replication proteins [BR:
lvg03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
121415776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
121415776
NCBI-ProteinID:
XP_041465039
LinkDB
All DBs
Position
5:24125558..24156720
Genome browser
AA seq
1050 aa
AA seq
DB search
MVKVGDSSEDGNEGRISFKSDVERLQQTRRVYRSAQDLTHKLESVFRHKQAYRVVFEKDS
IEMRMRLRDLCERLMMLHPIDFGRKAEEILWWKVYYNVITLAKKSKKYIRSGSSLECAYR
THLLAATGFYHHLLMRLQWEYGLQENHIMDFISFPDQDQVKDTCMDANKPEAKDWAQKAC
HRCLIYLGDLARYRQEFEGPSSCLLAQRFYHQALVLNPAMGMPHNQLGTLAGTRYQGLDA
AYHYLRCWLSDLRFDGAIANLEKVFERNQKRFHELPSSPSPDLPAELQRPRDIKQFLIRF
LYLQELFQPSNKTSTDTLPSLCQEVLQGFHQCMLHGAVPHARQRDEEGRESYLSNDIIFK
LVVLTLMSTYRLQKAGSKQTSTAVVFTLALFSYILNHLCEKLNNAVYRKIYPDQTATAFT
KAQDSGGSTDGRASPANTITPILSQDVDSDGTVKPAKKKQQKKKPKTVLKAMRRRRKRAG
MGAHTSEESDLSEGEPGEDNQSNGSSGESGEERVLAAESDSDYFMDSQELELDDEEALEK
HNVHEDFQTPPPGEGEEVALNIMNDIMVEDMSSQLITPPAGPTHTPPGRRNIRLAPSFDA
YTKETSSSKTKEDGQDKKGGSPMGSLQTSPGKENKDTSVTSASTSPTELQTSQIPLPLIM
EILTSEGLLPVIKILTDWLRTNEDFIIKTAQSSQPLWARLASLLNMCPHEKSLVNQDWCG
SIALRQLLEGALNSGNGKTWYQPIPLTEDIAIWTMPPLQYLQKKMKFGIHHDLDLTAQEE
TVIRVLCLRQFGYYLSSIEGISLCCEDDHFISEAVDQSDEQEDDEPQQQPQDDESQGSGK
PEEKADDGETRRQQVMRGMAQLRLQSEVSQLEGSIEPLGMDTLSPYLIPDTAVLSNQLSV
VRSLVTTSRFIFIIPKAVVSQLDVNKKYQSKAREAIKFMEKEFQIGNRYLRAQKDKESLR
FDDNSKTKIDDVNVRTFCSIAECAHFFAVRSGDPSLRSPANPTPGGMVTILTHQEPSDNP
RVTATIDKLLNVGVDVTTARDFQARWQAHT
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaagtaggtgattcgtcagaagatggaaatgaaggtcgtatttcgtttaagtca
gacgtggaacgtcttcagcagactcgacgtgtttataggtctgcccaagatctgacccac
aagctggagtctgttttcaggcacaagcaggcctacagggttgtctttgagaaagactca
atagaaatgcgcatgagattgcgtgatctttgtgaacgtttgatgatgcttcacccgatt
gattttgggagaaaagcagaagagattctctggtggaaagtctattataatgtcattacc
ctggctaagaagagtaaaaagtacatacgcagcggttcttccctggagtgtgcataccgg
acacacctcttggccgctacaggattctaccatcatctcctgatgaggctacagtgggag
tatggcctgcaggagaaccacatcatggacttcatcagcttcccggatcaagatcaggtc
aaagatacctgcatggatgccaataaaccagaggccaaagactgggctcagaaagcctgt
caccgatgtctcatctatcttggtgacttggcaaggtataggcaggaatttgaaggtccc
agtagttgtcttcttgctcagcgattctatcaccaagccctggtcctgaaccctgccatg
ggcatgcctcataatcagctgggtaccctggccggaacgcgctatcaaggactcgatgca
gcatatcattacttgcgatgctggttatcagatctgaggtttgacggtgctattgccaac
ttggaaaaggtctttgaaaggaatcagaagagattccacgagttgccttcgagtccaagc
cctgatcttccagcagaattacagagaccacgggacatcaaacagtttctgattcgtttc
ctctacctgcaagaattgttccagccgagcaacaagacgtccactgacaccctgccgtcg
ctatgtcaggaggtgctgcagggcttccaccagtgcatgctgcatggcgccgtacctcat
gcaaggcaaagggacgaggagggcagagagagctatctgtcgaatgatattatcttcaaa
ttggttgtgctgactctaatgagtacatataggctgcagaaagcaggttccaagcagaca
tccacagctgttgtcttcaccctcgccttgttctcgtacatactcaaccatctttgtgag
aaactcaacaatgctgtctacagaaagatttatcccgaccagactgctactgctttcaca
aaagcccaagactcgggtggatcaaccgacggccgagccagtccggccaacaccatcaca
cctatcctgagccaggacgtagacagcgacggcactgtcaaaccagccaagaagaagcag
cagaagaagaagcccaagacggtgctgaaggccatgcgacgccgtcgtaagagggctggg
atgggggcccacaccagtgaggagtctgacctcagcgagggggaaccgggggaggacaat
caatccaacggtagctctggagagtctggggaggagagggttctggctgctgaatcagat
agtgattatttcatggacagccaggagcttgagctagatgatgaagaggctttggagaaa
cataatgttcatgaggatttccagacccctcccccaggtgaaggtgaggaggtcgccctc
aacatcatgaacgacatcatggtggaagacatgtcctctcaactcatcacccctcccgcc
ggccccacccatacccctcccggtaggcgtaacatccgcctggcaccaagcttcgacgct
tacaccaaggaaacatcgtcttcaaagaccaaggaagatggccaggataagaaaggggga
tcccccatggggtccttacagacttctccaggaaaagaaaacaaagataccagtgtcact
agtgcttcaaccagcccaacggaactacagaccagtcagatccctctaccgctgatcatg
gagatattgacaagcgagggcctcctacctgtcattaagatcctcactgattggctgcgg
actaatgaagacttcatcataaagacagcacagagttctcagccactctgggctagacta
gccagtctcctcaacatgtgtccccatgaaaagtcacttgtaaaccaagattggtgtggt
agcattgccctgagacagctccttgagggtgctctcaacagtggaaatggcaagacatgg
taccagcctattcctctgactgaagacattgctatatggaccatgccgcctctacagtac
ctacagaagaagatgaagttcggaatccatcatgacctggacctgactgcacaagaagag
actgtcatacgagtcctgtgtcttcgtcagtttggttactacctgagcagtatcgagggt
atcagtctttgttgcgaggatgatcacttcatcagtgaagctgtagaccagtctgatgaa
caagaagatgacgaaccccagcaacaaccacaggatgatgaatctcaaggaagtggtaaa
cctgaagaaaaagctgatgatggagaaacgaggagacagcaagttatgagaggaatggcc
cagcttagattacagtctgaagtaagtcagctcgaaggcagtatagaacccctgggcatg
gacactctttccccatacctgatcccagatactgctgtcttatccaatcagctatcagtt
gtgagatcgttagtcactacatcacgattcatcttcattatacctaaagcagttgtttct
caattagatgtcaacaagaaataccaatccaaggctcgagaagcaattaagttcatggag
aaagaattccaaattggcaacagatacttaagagcacaaaaagataaagagagtctacgc
tttgacgacaactccaaaaccaagatagatgatgttaatgtcagaaccttctgcagcata
gcggaatgtgctcatttctttgccgttcgctctggggatccctccttgcgtagccctgcc
aaccctaccccaggggggatggtcaccattctcacacaccaggagccatcagacaatccc
agggtgacggccaccatcgacaagcttctcaacgtcggtgtcgacgtcaccacggccagg
gatttccaagctaggtggcaggcccatacgtga
DBGET
integrated database retrieval system
