Lytechinus variegatus (green sea urchin): 121415803
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Entry
121415803 CDS
T11173
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03013
Nucleocytoplasmic transport
lvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121415803
03015 mRNA surveillance pathway
121415803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121415803
Enzymes [BR:
lvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121415803
5.6.2.5 RNA 5'-3' helicase
121415803
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121415803
mRNA cycle factors
Common to processing body (P body) and stress granule
121415803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
AAA_16
UvrD-helicase
NPHP3_N
DEAD
NAT10_TcmA_helicase
nSTAND3
ATPase
SRP54
AAA_22
AAA
PhoH
DUF269
Motif
Other DBs
NCBI-GeneID:
121415803
NCBI-ProteinID:
XP_041465069
LinkDB
All DBs
Position
5:25326094..25345068
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AA seq
1156 aa
AA seq
DB search
MSVDAYGPSSQSLLTFLDAEEHDLLGADTQGTDFDYNVGDFTLPSQTQASQSQASQLDLA
SQSQSQVDASQTNGIDESVAAVGQQVKELTFEEDEEDATVLSKDLPNHACKYCGIHDPAA
VVLCNGTKKWFCNGRGNTSGSHIINHLVRAKCKEVTLHKDSPLGETVLECYNCGCRNVFL
LGFIPAKADSVVVLLCRQPCATQSNLKDMNWDPSQWQPLIQDRCFLKWLVKIPTEQEQLR
ARQISASQLNRLEELWKENPEATLEDLEKPGVDEEPASVMLRYEDAYMYQNIFGPLVKME
ADYDRKLKETQTQEGVTVRWDIGLNRKTRATFNFPKKEDLKLMHGDELRVRYTDPREPWS
GLAHVVKTPDNYSDEICVELKSSSNIPVKFTTNFAVDFVWKSTSFDRMQNALKTLAVDDT
AVSSYLYHRLLGHDVENLVLKCNLPKRFSAQGLPELNHSQVSAVRTVLTRPLSLIQGPPG
TGKTVTSASIVYHLAKQGTGQVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAIDSP
VSFLSLHNQVRNMEGAEEMQKLQALKDEMGELSSNDEKRYRTLKRNCERELLQNADVICC
TCVGAGDPRFARFRFRAVLIDESTQSTEPECLIPAVLGSRQLVLVGDHCQLGPVVMCKKA
ANAGLCQSLFERLVVLGIRPIRLQVQYRMHPSLSAFPSNIFYEGSLQNGVTAAERINRAV
DFPFPQPDKPMFFYATTGQEEIASSGTSYLNRTEAANVEKLTTRFLRAGVKPEQIGIITP
YEGQRAFIVQYMQYSGPLNVKLYQEVEIASVDAFQGREKDYIILSCVRANDHQGIGFLND
PRRLNVALTRGRYGVIIVGNPKVLSRHPLWNHLLTYYKEQKVLVEGPLNNLKESLIQFSK
PRKLINPSNPGGRYMSMAMFDAREALAPGGVFDRSRMSNGGPSHFPANHGRVHDQMGYIQ
PNQSRIAAANFPIPVNMFMPPPIPPGAPGFFNQPPPPNARGPGPNRGPNFSGSPGGGGGR
KKGRGYQGSQHPRQQQQNNAASNGQGKAGGNSGSQNMSQYNLSLNSTQNSQPDVSQSFSQ
GVLTQGNMSMSQPMSQPGLSQPGFSQMGLSQPGLSQPELSQESFMGESEFKSQLDAALSQ
DSTYQGDRNYMQGFGY
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtagatgcctacggacccagctcgcagagcttgctcacgtttttggatgcggaa
gaacatgacctgctgggagccgacacgcaaggcacagactttgactacaatgtgggggac
tttacattaccatcacagacacaagcttctcaaagccaagcatcccagttggatttggct
tcacaatctcagagtcaggtggatgctagtcaaactaatgggatagatgagtctgtggct
gctgtaggacaacaggtcaaagaattaacctttgaggaagacgaagaagatgcaactgtg
ctctccaaagatttacccaaccatgcctgcaagtactgcggcattcatgaccctgctgct
gttgttctctgcaatggaaccaagaaatggttttgcaatggacgagggaacacctctggc
agccatattattaaccatcttgtgagagccaagtgcaaggaggtgaccctccataaggac
agtccccttggggaaaccgttctggaatgctacaactgcggatgccgcaatgtcttcttg
ctagggttcatcccagccaaggccgactctgtggtcgttctgctatgccgtcaaccttgt
gccactcaaagcaacttgaaggatatgaattgggatccaagccagtggcagcctctgatc
caggaccgctgcttcttgaagtggctagtcaagatccctactgagcaggagcagctgagg
gctcgtcagatctctgcctctcagctcaaccgcctggaggagctgtggaaggagaacccg
gaggccaccctggaggaccttgagaaaccaggagttgatgaggagcctgcctctgtcatg
cttaggtatgaggatgcatacatgtatcagaatatctttggacctcttgtcaagatggaa
gctgattatgacaggaagctgaaggagacccagacccaagaaggggtcactgttcgttgg
gatattggtctcaaccgcaaaacaagagccacctttaacttccccaagaaggaagatctg
aagctgatgcatggtgatgaactgagggtccgctacaccgacccaagagagccctggtct
ggtttagctcatgtggtcaagactccagacaactacagcgatgagatctgtgtggaattg
aaaagcagtagtaacatccctgtcaagttcaccaccaactttgctgttgactttgtctgg
aagtcaacatcatttgacagaatgcagaatgccctgaagactctagcagtggatgacacc
gccgtgtcgagctatctgtatcatcgtctcttgggacatgatgttgagaacctcgttctc
aagtgtaacctacctaagcggttctcggcccagggactaccggagctcaatcattcccag
gtgtcagccgtacgcaccgtgctcacacgcccactaagtctcattcagggaccacctggt
actggcaagactgtgacctccgcttctattgtctatcatctggccaagcagggaactggg
caagtactggtgtgtgctcctagtaacatcgcggtggatcagctgactgagaagattcat
aagactggtctcaaggtcgtcagattgtgtgccaagagcagggaggccattgattcaccc
gtctctttcctctccctccacaaccaggttcgtaacatggagggagcagaagagatgcag
aagctccaagctctgaaggatgagatgggagaactgtcaagcaatgatgagaagaggtac
cgcactctcaagagaaactgtgagcgagagctactacagaatgccgatgtgatctgctgc
acctgtgttggagctggtgacccacgctttgctcgttttagattccgtgctgtattgatt
gatgagagcactcagtctactgagccagagtgcctcatccctgctgttcttggatctaga
cagcttgttctagtcggtgatcattgccagcttggtcccgttgtcatgtgcaagaaggca
gctaatgcaggcctgtgccaatctctctttgaacgtctcgtcgtccttggaatccgacca
atccgacttcaggtccagtaccgcatgcacccgtccctcagtgcattcccatcaaacatc
ttctatgaggggtccctacagaatggagttacagcagctgagaggatcaaccgtgcagtg
gatttcccattccctcaacctgacaagccaatgttcttctatgctaccacagggcaggaa
gagattgccagttctggtacctcctacctcaacaggactgaagcagccaatgttgagaag
ctgacaactcgattcttgcgtgctggtgtgaagccagaacagattgggattatcacgcct
tacgagggccagcgtgcgttcattgtacagtacatgcagtacagcgggcccctcaatgtc
aagctttaccaagaggtggagatcgctagcgtggatgccttccagggacgtgagaaggat
tacattatcctgtcttgcgtcagggccaatgatcaccaaggcatcggattcctcaatgat
cccagacgtctaaacgtcgccctaactcgcggaaggtatggagtaataattgttggtaac
cccaaggtcttatcacgtcatcccctgtggaaccatctccttacatactacaaggaacag
aaggtcttggtggaaggtccactcaacaatctcaaggaaagtttgatccagttcagcaaa
cctcgcaagctcatcaacccttccaacccgggaggtcgttatatgagtatggccatgttt
gatgccagggaagccctagcacctggtggtgtctttgacaggtccaggatgtctaatgga
ggtccatctcacttcccagccaaccatggacgtgtccatgaccagatgggttacatccaa
ccaaaccagtcccgcatcgctgcagccaacttccccatccccgtcaacatgttcatgccc
ccacccatccccccaggagcccctggcttcttcaaccagccccctccacccaatgctcgc
ggcccaggtcccaacagaggacccaatttctctggcagcccaggaggaggaggaggccgt
aagaaggggcgtggttaccaaggttcgcagcatccgcgtcagcagcagcagaataatgca
gctagcaatggacagggtaaagccggtgggaacagcgggagtcagaacatgtcgcagtac
aacctctctctcaacagcacccagaacagccagcctgacgtgtcgcagtccttctcacaa
ggtgtcctaacccagggcaacatgtccatgtctcagcccatgagtcagccaggactatct
caaccaggcttctctcaaatgggtctctcccaaccagggctatctcagccagagctttct
caggaaagcttcatgggcgagtctgagttcaagtctcagctggatgccgccctctcccag
gactccacctaccagggagaccgtaactacatgcagggcttcggttattag
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